miRNA display CGI


Results 61 - 80 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 40299 0.67 0.872847
Target:  5'- uCCGUCG-CGCCgaggagGGACGgUuuuccucacccGCCGCGCg -3'
miRNA:   3'- -GGCAGCuGCGG------UCUGCgAc----------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 41194 0.67 0.835939
Target:  5'- gCGUCGuCGUCAcGGCGCUG-CUGC-Ca -3'
miRNA:   3'- gGCAGCuGCGGU-CUGCGACuGGCGcG- -5'
10728 5' -58.5 NC_002794.1 + 41250 0.67 0.851243
Target:  5'- gCCGcCGACGCCGGcggccCGUcG-UCGCGCu -3'
miRNA:   3'- -GGCaGCUGCGGUCu----GCGaCuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 41287 0.71 0.636387
Target:  5'- aCGgCGGCGgCuccGACGCgGGCCGCGUg -3'
miRNA:   3'- gGCaGCUGCgGu--CUGCGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 41363 0.66 0.892709
Target:  5'- gCCGUCGGC-CUucGCGCUcGCgGCGCc -3'
miRNA:   3'- -GGCAGCUGcGGucUGCGAcUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 41864 0.67 0.843678
Target:  5'- gCCGcCGGgcaggGCCGGGCGCUG-CCaCGCc -3'
miRNA:   3'- -GGCaGCUg----CGGUCUGCGACuGGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 42599 0.66 0.892709
Target:  5'- gCG-CGGCgGCCGGGagcggGCUcucucgacGACCGCGCu -3'
miRNA:   3'- gGCaGCUG-CGGUCUg----CGA--------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 42724 0.66 0.898312
Target:  5'- gCGUCcACGuCCAagucuucGACcgaGCUGACCGCGa -3'
miRNA:   3'- gGCAGcUGC-GGU-------CUG---CGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 43446 0.66 0.898924
Target:  5'- gUGggggCGAUGUCgaAGugGCUGACCuuGCa -3'
miRNA:   3'- gGCa---GCUGCGG--UCugCGACUGGcgCG- -5'
10728 5' -58.5 NC_002794.1 + 43984 0.67 0.835939
Target:  5'- gUCGUUGGaGCCGGACGUguggGAgcaCgGCGCg -3'
miRNA:   3'- -GGCAGCUgCGGUCUGCGa---CU---GgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 44185 0.7 0.684723
Target:  5'- cUCGUCGACuCCGGGCGaagccgGGCCGaCGUc -3'
miRNA:   3'- -GGCAGCUGcGGUCUGCga----CUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 44242 0.66 0.898924
Target:  5'- gCCGggCGGCucgguGCCGGGCgGCUcGGCCGC-Cg -3'
miRNA:   3'- -GGCa-GCUG-----CGGUCUG-CGA-CUGGCGcG- -5'
10728 5' -58.5 NC_002794.1 + 44384 0.69 0.76771
Target:  5'- uCCG-CGACGCUcGACGCgcccguuccggucUGACCG-GCc -3'
miRNA:   3'- -GGCaGCUGCGGuCUGCG-------------ACUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 44567 0.69 0.741345
Target:  5'- cCCGUUGACGUC--ACGCggGACCGaGCc -3'
miRNA:   3'- -GGCAGCUGCGGucUGCGa-CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 44861 0.7 0.72273
Target:  5'- gUCGUCGA-GCCgcAGACGCUGcaACuCGCGg -3'
miRNA:   3'- -GGCAGCUgCGG--UCUGCGAC--UG-GCGCg -5'
10728 5' -58.5 NC_002794.1 + 45910 0.68 0.786244
Target:  5'- gCCGcCGGCaCCGGGCGacgaGGCuCGCGCu -3'
miRNA:   3'- -GGCaGCUGcGGUCUGCga--CUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 46146 0.69 0.768604
Target:  5'- -aGUCGGCGUCGauCGCccucugGAUCGCGCa -3'
miRNA:   3'- ggCAGCUGCGGUcuGCGa-----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 46613 0.66 0.892077
Target:  5'- gCCGUCcGCGCCGGgcuggacgagaucACGUUccGcCCGUGCa -3'
miRNA:   3'- -GGCAGcUGCGGUC-------------UGCGA--CuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 47132 0.69 0.759616
Target:  5'- gCCGcCGACucuucgGCCGGACGCacACCGUGg -3'
miRNA:   3'- -GGCaGCUG------CGGUCUGCGacUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 47422 0.75 0.449486
Target:  5'- gCCGUCGcgcggaGCGCCAGGCGUuucagGACgGgGCa -3'
miRNA:   3'- -GGCAGC------UGCGGUCUGCGa----CUGgCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.