miRNA display CGI


Results 81 - 100 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 47954 0.7 0.703835
Target:  5'- gCGUccCGGCGCCggcuGGGCGaccGCCGCGCg -3'
miRNA:   3'- gGCA--GCUGCGG----UCUGCgacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 48031 0.76 0.360175
Target:  5'- gCGUC-ACGCCGGACGCcgaGugCGUGCu -3'
miRNA:   3'- gGCAGcUGCGGUCUGCGa--CugGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 48606 0.73 0.521525
Target:  5'- gCCGUCGGCGUcggccuCAGACGCggagcGGCCGuCGg -3'
miRNA:   3'- -GGCAGCUGCG------GUCUGCGa----CUGGC-GCg -5'
10728 5' -58.5 NC_002794.1 + 48873 0.76 0.367767
Target:  5'- cCCGUCGGCgGCCAgGugGCaGGCCaGCGUu -3'
miRNA:   3'- -GGCAGCUG-CGGU-CugCGaCUGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 48922 0.69 0.759616
Target:  5'- uCCGcagCGccaGCGCCAGGCGCUcggcGACCucuuCGCa -3'
miRNA:   3'- -GGCa--GC---UGCGGUCUGCGA----CUGGc---GCG- -5'
10728 5' -58.5 NC_002794.1 + 49097 0.68 0.811751
Target:  5'- cCCGUCG-CGCCGG-CGCU--CgGCGUc -3'
miRNA:   3'- -GGCAGCuGCGGUCuGCGAcuGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 49242 0.68 0.819969
Target:  5'- gCCGUCGACG---GGCGC---CCGCGCa -3'
miRNA:   3'- -GGCAGCUGCgguCUGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 49367 0.68 0.819969
Target:  5'- gCCGUCGAUGUggaAGaaGCGCgccaGGCCGcCGCc -3'
miRNA:   3'- -GGCAGCUGCGg--UC--UGCGa---CUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 49449 0.68 0.811751
Target:  5'- gCgGUCGuCGCCGuGGCGCcgccgUGACCGgcCGCc -3'
miRNA:   3'- -GgCAGCuGCGGU-CUGCG-----ACUGGC--GCG- -5'
10728 5' -58.5 NC_002794.1 + 49505 0.67 0.858631
Target:  5'- gCCGUCGucgcuCGCCGGguacauggguucGCGC--GCCGCGa -3'
miRNA:   3'- -GGCAGCu----GCGGUC------------UGCGacUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 49604 0.74 0.475894
Target:  5'- aUCGgCGACGgCGGGCGCcGGCgGCGCc -3'
miRNA:   3'- -GGCaGCUGCgGUCUGCGaCUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 49647 0.67 0.843678
Target:  5'- aCCGUCGGCGaguCCc-GCGCcGACCGguaCGCg -3'
miRNA:   3'- -GGCAGCUGC---GGucUGCGaCUGGC---GCG- -5'
10728 5' -58.5 NC_002794.1 + 49857 0.66 0.88629
Target:  5'- gCGUCGGCGgcgcccgccacCCGGACGUgGAgCGCccGCa -3'
miRNA:   3'- gGCAGCUGC-----------GGUCUGCGaCUgGCG--CG- -5'
10728 5' -58.5 NC_002794.1 + 50330 0.68 0.815056
Target:  5'- cUCGUCGAUGUUGGGCucggucaccggcuccGCcaUGACCGCGg -3'
miRNA:   3'- -GGCAGCUGCGGUCUG---------------CG--ACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 50765 0.66 0.904931
Target:  5'- cCCGggCGGCGgCGacGGCGCgucucgGGCgGCGCc -3'
miRNA:   3'- -GGCa-GCUGCgGU--CUGCGa-----CUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 50803 0.67 0.843678
Target:  5'- cUCGccCGGCGUCGGGCGCU--CCgGCGCc -3'
miRNA:   3'- -GGCa-GCUGCGGUCUGCGAcuGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 51377 0.67 0.834372
Target:  5'- cCCGUccggcCGGCGaCAGGCGCccuccgggcucACCGCGCa -3'
miRNA:   3'- -GGCA-----GCUGCgGUCUGCGac---------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 52084 0.72 0.578345
Target:  5'- gCG-CGGCGCaCAuGCuGCUGGCCGUGCu -3'
miRNA:   3'- gGCaGCUGCG-GUcUG-CGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 52914 0.7 0.684723
Target:  5'- gCCGUCGcCGCCGccGuCGCUcGGCCG-GCa -3'
miRNA:   3'- -GGCAGCuGCGGU--CuGCGA-CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 53248 0.69 0.732076
Target:  5'- cCCGcCG-CGCCGG-CGUc-GCCGCGCg -3'
miRNA:   3'- -GGCaGCuGCGGUCuGCGacUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.