miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 53593 0.71 0.646088
Target:  5'- gUGUCGGCGUCGG-CGUcaccgGGCCGcCGCa -3'
miRNA:   3'- gGCAGCUGCGGUCuGCGa----CUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 54394 0.66 0.892709
Target:  5'- gCGUCGACGCCcGccuCGCgGAgCuCGCa -3'
miRNA:   3'- gGCAGCUGCGGuCu--GCGaCUgGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 54661 0.72 0.607292
Target:  5'- gUGUCGAUguugacguacaGCCGGuacACGCUGAgCGCGUa -3'
miRNA:   3'- gGCAGCUG-----------CGGUC---UGCGACUgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 54855 0.66 0.892709
Target:  5'- cCCGU--AgGCCGG-CGCgGGCCGcCGCa -3'
miRNA:   3'- -GGCAgcUgCGGUCuGCGaCUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 54997 0.69 0.732076
Target:  5'- aCGgcggCGAcuCGCCGGGCGUccgccGCCGCGCc -3'
miRNA:   3'- gGCa---GCU--GCGGUCUGCGac---UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 55805 0.74 0.467004
Target:  5'- gCG-CaGCGCCGGGCGCgGGCgCGCGCu -3'
miRNA:   3'- gGCaGcUGCGGUCUGCGaCUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 56903 0.68 0.803385
Target:  5'- gCCGcgCGugGCCacGGGCGCcgGGCUGCcgGCc -3'
miRNA:   3'- -GGCa-GCugCGG--UCUGCGa-CUGGCG--CG- -5'
10728 5' -58.5 NC_002794.1 + 58007 0.7 0.713314
Target:  5'- uUCGUCGcCGCCGGGgcCGCcGccggcgaacccGCCGCGCc -3'
miRNA:   3'- -GGCAGCuGCGGUCU--GCGaC-----------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 58086 0.71 0.665454
Target:  5'- gCGgccCGGCGCCc-GCGCUcGACCGCuGCg -3'
miRNA:   3'- gGCa--GCUGCGGucUGCGA-CUGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 58437 0.75 0.449486
Target:  5'- aCGcCGAgGCCAcgcuGCGcCUGGCCGCGCu -3'
miRNA:   3'- gGCaGCUgCGGUc---UGC-GACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 58544 0.67 0.835156
Target:  5'- gCCG-CGGCGCgc-GCGCUGcuggcgcGCUGCGCg -3'
miRNA:   3'- -GGCaGCUGCGgucUGCGAC-------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 58862 0.68 0.827235
Target:  5'- cUCGUCGcCGaCCGGcagccguGCGC--GCCGCGCa -3'
miRNA:   3'- -GGCAGCuGC-GGUC-------UGCGacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 59197 0.69 0.750527
Target:  5'- gCgGUCGACGCgCAcgucGGCGuCUcGGCCGCGg -3'
miRNA:   3'- -GgCAGCUGCG-GU----CUGC-GA-CUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 59295 0.68 0.79488
Target:  5'- gCCGcUCGACGCCGcgcaGCGCc-ACgGCGCg -3'
miRNA:   3'- -GGC-AGCUGCGGUc---UGCGacUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 59652 0.66 0.88629
Target:  5'- cCCGgu--CGCCAcGGCGCUGcagaGCCGCcuGCg -3'
miRNA:   3'- -GGCagcuGCGGU-CUGCGAC----UGGCG--CG- -5'
10728 5' -58.5 NC_002794.1 + 59968 0.68 0.786244
Target:  5'- aCCGgcacccCGAgGUCGacCGCUGGCUGCGCc -3'
miRNA:   3'- -GGCa-----GCUgCGGUcuGCGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 60034 0.69 0.777483
Target:  5'- aCGcCGACGCCGucuCGCUGcucaccuucgGCCGcCGCa -3'
miRNA:   3'- gGCaGCUGCGGUcu-GCGAC----------UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 60511 0.68 0.828034
Target:  5'- gCGUCGACGgCacggAGGgGCUGguggagaaGCCGUGCc -3'
miRNA:   3'- gGCAGCUGCgG----UCUgCGAC--------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 60645 0.69 0.750527
Target:  5'- gCCGgCGGCGCCGGccacccggcGCGCgccGCCGcCGCc -3'
miRNA:   3'- -GGCaGCUGCGGUC---------UGCGac-UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 60718 0.67 0.835939
Target:  5'- aCC--UGAuCGCCgAGACGCUG-CCGCuGCa -3'
miRNA:   3'- -GGcaGCU-GCGG-UCUGCGACuGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.