miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 195578 0.67 0.872847
Target:  5'- cCCGacCGAcCGCCGGAC-C-GGCCGaCGCg -3'
miRNA:   3'- -GGCa-GCU-GCGGUCUGcGaCUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 194602 0.74 0.4582
Target:  5'- cCCGUCGcaaGCCGGuACGUguacACCGCGCa -3'
miRNA:   3'- -GGCAGCug-CGGUC-UGCGac--UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 194529 0.66 0.892709
Target:  5'- gCCGgcccagcagCGcCGCCAGcACGC---CCGCGCg -3'
miRNA:   3'- -GGCa--------GCuGCGGUC-UGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 194352 0.67 0.843678
Target:  5'- aCGggGGCGCCAGGaacCGCUc-CCGCGUg -3'
miRNA:   3'- gGCagCUGCGGUCU---GCGAcuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 194302 0.68 0.79488
Target:  5'- gUCGUCcaGCGCCAG-CGCcuGCCGCaGCg -3'
miRNA:   3'- -GGCAGc-UGCGGUCuGCGacUGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 194078 0.67 0.841374
Target:  5'- uUCGUCGcCGCCAccgccgugugccccGAacacgUGCUGcggcACCGCGCg -3'
miRNA:   3'- -GGCAGCuGCGGU--------------CU-----GCGAC----UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 194027 0.66 0.88629
Target:  5'- gCCGcCGGCGCCu--CGCccGCCGcCGCc -3'
miRNA:   3'- -GGCaGCUGCGGucuGCGacUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 193815 0.71 0.646088
Target:  5'- cUCGUCuGGCGCC-GACGCgucGCgGCGCc -3'
miRNA:   3'- -GGCAG-CUGCGGuCUGCGac-UGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 192555 0.66 0.904931
Target:  5'- cCCGUCGuaGCGgCAGGCGCa---CGCGa -3'
miRNA:   3'- -GGCAGC--UGCgGUCUGCGacugGCGCg -5'
10728 5' -58.5 NC_002794.1 + 191779 0.67 0.865834
Target:  5'- uCCG-CGACGCUcGAacguuCGCUcGACCGCccGCu -3'
miRNA:   3'- -GGCaGCUGCGGuCU-----GCGA-CUGGCG--CG- -5'
10728 5' -58.5 NC_002794.1 + 191515 0.69 0.768604
Target:  5'- gUGcCaGCGCCGGGCGUcGGCCcGCGCc -3'
miRNA:   3'- gGCaGcUGCGGUCUGCGaCUGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 190748 0.69 0.768604
Target:  5'- gCCGUCu-CGaCGGGgGCggcGGCCGCGCg -3'
miRNA:   3'- -GGCAGcuGCgGUCUgCGa--CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 190182 0.66 0.88629
Target:  5'- cCCGcCG-CGCCAccuccacGCGCUccagcGCCGCGCg -3'
miRNA:   3'- -GGCaGCuGCGGUc------UGCGAc----UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 190114 0.7 0.694303
Target:  5'- gCCGUCcGCGCC-GAaGCgGuCCGCGCg -3'
miRNA:   3'- -GGCAGcUGCGGuCUgCGaCuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 189902 0.69 0.741345
Target:  5'- gCCGUCaGCGCCGccGCGC-GACCGCccGCu -3'
miRNA:   3'- -GGCAGcUGCGGUc-UGCGaCUGGCG--CG- -5'
10728 5' -58.5 NC_002794.1 + 189862 0.7 0.675104
Target:  5'- gCCGUCGGCGUCGucGcCGCcGACCGgccCGCu -3'
miRNA:   3'- -GGCAGCUGCGGU--CuGCGaCUGGC---GCG- -5'
10728 5' -58.5 NC_002794.1 + 189161 0.67 0.843678
Target:  5'- cCCG-CGGCagGUCguAGACGUagaUGGCCGCGUg -3'
miRNA:   3'- -GGCaGCUG--CGG--UCUGCG---ACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 189032 0.74 0.503051
Target:  5'- gCCGcUCGAcCGCCAG-CgGCgGGCUGCGCg -3'
miRNA:   3'- -GGC-AGCU-GCGGUCuG-CGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 188329 0.67 0.843678
Target:  5'- cUCGUCGcCGCCGccggcGGCGCcG-UCGCGCc -3'
miRNA:   3'- -GGCAGCuGCGGU-----CUGCGaCuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 187935 0.69 0.750527
Target:  5'- aCCGUCG-CGUC--ACGC-GugCGCGCg -3'
miRNA:   3'- -GGCAGCuGCGGucUGCGaCugGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.