miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 187764 0.69 0.768604
Target:  5'- gCCGcCGGCGCCGGuCGCcucGACCcCGg -3'
miRNA:   3'- -GGCaGCUGCGGUCuGCGa--CUGGcGCg -5'
10728 5' -58.5 NC_002794.1 + 187563 0.68 0.786244
Target:  5'- gCCGUCGGgcccguaccCGCCGucGGCGC-GGCCGCcgucGCg -3'
miRNA:   3'- -GGCAGCU---------GCGGU--CUGCGaCUGGCG----CG- -5'
10728 5' -58.5 NC_002794.1 + 187467 0.71 0.626683
Target:  5'- gCGUCGcucggcgcGCGCCGGGC-CgaggacgaGGCCGCGCa -3'
miRNA:   3'- gGCAGC--------UGCGGUCUGcGa-------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 186942 0.69 0.777483
Target:  5'- gCCGccaCGGCccCCGGGcCGCUGGCCGcCGCc -3'
miRNA:   3'- -GGCa--GCUGc-GGUCU-GCGACUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 186843 0.75 0.432337
Target:  5'- cCCGaCaGCGCgCGGGCGCUG-CCGUGCa -3'
miRNA:   3'- -GGCaGcUGCG-GUCUGCGACuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 186756 0.66 0.898924
Target:  5'- aCGUaccaggGGCagGCCAGGCGCUccGACacguaGCGCg -3'
miRNA:   3'- gGCAg-----CUG--CGGUCUGCGA--CUGg----CGCG- -5'
10728 5' -58.5 NC_002794.1 + 186722 0.69 0.777483
Target:  5'- cCCGUCGcUGCUAua-GCUGcccACCGCGCc -3'
miRNA:   3'- -GGCAGCuGCGGUcugCGAC---UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 186623 0.69 0.750527
Target:  5'- -gGUCucCGCCAGccgacacagcccGCGCgggucGGCCGCGCg -3'
miRNA:   3'- ggCAGcuGCGGUC------------UGCGa----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 186381 0.68 0.819969
Target:  5'- gCCGUCGuCGCCgcAGcCGCa-GCCGCGg -3'
miRNA:   3'- -GGCAGCuGCGG--UCuGCGacUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 186260 0.7 0.694303
Target:  5'- aCGUCGAccggaucacCGCCuGGCGCggcgGcACCGCGg -3'
miRNA:   3'- gGCAGCU---------GCGGuCUGCGa---C-UGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 186081 0.7 0.72273
Target:  5'- gCCGcCGccuuCGCCGGGCGCUucgucGCCGuCGCc -3'
miRNA:   3'- -GGCaGCu---GCGGUCUGCGAc----UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 185929 0.73 0.549709
Target:  5'- aCCGcCGGCcacccGCCAGGCucGC-GGCCGCGCc -3'
miRNA:   3'- -GGCaGCUG-----CGGUCUG--CGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 185519 0.75 0.414748
Target:  5'- gCGUCGGCGUCAuGACGCgccUcaucucgccacccGGCCGCGCg -3'
miRNA:   3'- gGCAGCUGCGGU-CUGCG---A-------------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 185421 0.66 0.885636
Target:  5'- gCCGUCGacucgacgcgGCGCCAuGCGCgGAcaggucuCCGCGa -3'
miRNA:   3'- -GGCAGC----------UGCGGUcUGCGaCU-------GGCGCg -5'
10728 5' -58.5 NC_002794.1 + 185173 0.66 0.88629
Target:  5'- gCCGgcgCGGCGCgGucGGCGCgGuCgGCGCg -3'
miRNA:   3'- -GGCa--GCUGCGgU--CUGCGaCuGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 184817 0.68 0.811751
Target:  5'- gCGUCacggggcacGCGuCCGGGCGC--ACCGCGCa -3'
miRNA:   3'- gGCAGc--------UGC-GGUCUGCGacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 184711 0.68 0.798299
Target:  5'- uCCGUCGGCucuuccgagcgacagGCCA-ACGCcagGuCCGCGCc -3'
miRNA:   3'- -GGCAGCUG---------------CGGUcUGCGa--CuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 184583 0.67 0.851243
Target:  5'- gCGgCGGCgGCCAcGCGC-GGCCGCGg -3'
miRNA:   3'- gGCaGCUG-CGGUcUGCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 184486 0.68 0.79488
Target:  5'- gCG-CGGgGCCccGGACGCccgGGCgGCGCg -3'
miRNA:   3'- gGCaGCUgCGG--UCUGCGa--CUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 184453 0.67 0.835939
Target:  5'- gCGcCGcUGCCGccCGCgGGCCGCGCg -3'
miRNA:   3'- gGCaGCuGCGGUcuGCGaCUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.