miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 184185 0.68 0.811751
Target:  5'- aCCG-CGGCGCCcGGCGa-GGCC-CGCu -3'
miRNA:   3'- -GGCaGCUGCGGuCUGCgaCUGGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 184037 0.67 0.835939
Target:  5'- aCCGcgCGcaGCGCgCGGuCGCgGGCCGCGg -3'
miRNA:   3'- -GGCa-GC--UGCG-GUCuGCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 183951 0.69 0.741345
Target:  5'- aCGUCGACGCgGuccccgucACGCUGcgcuccACCGCGUc -3'
miRNA:   3'- gGCAGCUGCGgUc-------UGCGAC------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 182994 0.66 0.898924
Target:  5'- gCCGgCGcuuCGCCgcGGGCGCc--CCGCGCg -3'
miRNA:   3'- -GGCaGCu--GCGG--UCUGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 182941 0.66 0.898924
Target:  5'- -aGUcCGGCGCCGGGCucgaGCcGACgGCGg -3'
miRNA:   3'- ggCA-GCUGCGGUCUG----CGaCUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 182209 0.68 0.819969
Target:  5'- gCGUCG-CGCCAcGGgGCUccgacggucaGGCCGCaGCa -3'
miRNA:   3'- gGCAGCuGCGGU-CUgCGA----------CUGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 182115 0.69 0.777483
Target:  5'- gCGgaucCGGCGCCAGcCGa--ACCGCGCc -3'
miRNA:   3'- gGCa---GCUGCGGUCuGCgacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 182035 0.66 0.879668
Target:  5'- gCCGcCGGCGaCCAGACcagGucCUGCGCg -3'
miRNA:   3'- -GGCaGCUGC-GGUCUGcgaCu-GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 181761 0.7 0.713314
Target:  5'- cCCGcUGACGCCGauGGCGCcGcgccGCCGCGUc -3'
miRNA:   3'- -GGCaGCUGCGGU--CUGCGaC----UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 181437 0.67 0.865834
Target:  5'- gCCGUCGGCGagGGGcCGCccgGAggacgucuuacCCGCGCc -3'
miRNA:   3'- -GGCAGCUGCggUCU-GCGa--CU-----------GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 180930 0.67 0.858631
Target:  5'- gCCGUCGGagGUCGGucuCGCguccgcGGCCGaCGCg -3'
miRNA:   3'- -GGCAGCUg-CGGUCu--GCGa-----CUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 180849 0.66 0.879668
Target:  5'- aCCGUCGucuacggccuCGUCGGAgGCggcgGAuCCgGCGCg -3'
miRNA:   3'- -GGCAGCu---------GCGGUCUgCGa---CU-GG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 180290 0.66 0.892709
Target:  5'- cCCG-CGcCGCCGcaacACGCcGGCCgGCGCg -3'
miRNA:   3'- -GGCaGCuGCGGUc---UGCGaCUGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 179492 0.66 0.898924
Target:  5'- uUGUCGGcCGUCcgGGAUGCUGAaguaCCGCuGCc -3'
miRNA:   3'- gGCAGCU-GCGG--UCUGCGACU----GGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 179244 0.68 0.803385
Target:  5'- -gGUCGGCGUCGG-CGa-GACCGcCGCc -3'
miRNA:   3'- ggCAGCUGCGGUCuGCgaCUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 178406 0.71 0.665454
Target:  5'- aUCGUCGcuaaGCguGuCGCacgGACCGCGCg -3'
miRNA:   3'- -GGCAGCug--CGguCuGCGa--CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 158429 0.66 0.879668
Target:  5'- aCGaaCGcACGCCAGGCGgguuCCGCGCu -3'
miRNA:   3'- gGCa-GC-UGCGGUCUGCgacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 157311 0.67 0.858631
Target:  5'- aCG-CGGCGCUcgaAGACGaaGACgCGCGUc -3'
miRNA:   3'- gGCaGCUGCGG---UCUGCgaCUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 156539 0.68 0.828034
Target:  5'- uCCGUCG-CGUCGGcCGUggauucGGCaCGCGCc -3'
miRNA:   3'- -GGCAGCuGCGGUCuGCGa-----CUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 154192 0.68 0.819969
Target:  5'- gCCGcCGACGaUCuggAGACGCUGGCgCG-GCa -3'
miRNA:   3'- -GGCaGCUGC-GG---UCUGCGACUG-GCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.