miRNA display CGI


Results 61 - 80 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 153716 0.68 0.79488
Target:  5'- aCCG-CGACGUCAccGACGCcgagccGACCGgGUu -3'
miRNA:   3'- -GGCaGCUGCGGU--CUGCGa-----CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 153340 0.69 0.732076
Target:  5'- aCGgCGACGCguguugucaGGACGCggcccGGCUGCGCg -3'
miRNA:   3'- gGCaGCUGCGg--------UCUGCGa----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 153287 0.66 0.879668
Target:  5'- cCCGUCG-C-CCgAGACGCaGGCCGgGg -3'
miRNA:   3'- -GGCAGCuGcGG-UCUGCGaCUGGCgCg -5'
10728 5' -58.5 NC_002794.1 + 152773 1.13 0.001536
Target:  5'- uCCGUCGACGCCAGACGCUGACCGCGCg -3'
miRNA:   3'- -GGCAGCUGCGGUCUGCGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 152228 0.66 0.892709
Target:  5'- aCGUCGcGCGCCAcgucGCGCgcACCGuCGCc -3'
miRNA:   3'- gGCAGC-UGCGGUc---UGCGacUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 151735 0.76 0.402457
Target:  5'- gUCGUCGGcCGCCGGucgccucgcGCGCUcguccucgagauggaGACCGCGCc -3'
miRNA:   3'- -GGCAGCU-GCGGUC---------UGCGA---------------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 151038 0.72 0.607292
Target:  5'- cCCGUCuGAUGaCGGGCGagugcacGGCCGCGCa -3'
miRNA:   3'- -GGCAG-CUGCgGUCUGCga-----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 150716 0.72 0.607292
Target:  5'- aUCGacuUCGACGUgcGGCgGCUGACCGCGUu -3'
miRNA:   3'- -GGC---AGCUGCGguCUG-CGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 150597 0.7 0.713314
Target:  5'- cCCGagGACgGCCGGGCGCcGGCUcUGCg -3'
miRNA:   3'- -GGCagCUG-CGGUCUGCGaCUGGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 149658 0.66 0.898924
Target:  5'- gCCGagGAgGCCgagcggGGGCGCgucgcgcucgacUGGCCGCGg -3'
miRNA:   3'- -GGCagCUgCGG------UCUGCG------------ACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 148121 0.72 0.597618
Target:  5'- aCgGUCGGUGUCGGGCGCggGGCCGCcgggGCg -3'
miRNA:   3'- -GgCAGCUGCGGUCUGCGa-CUGGCG----CG- -5'
10728 5' -58.5 NC_002794.1 + 147101 0.73 0.546868
Target:  5'- gCGUCGGCGCCcggcccaaggacgaAGACGUcGACgGCGg -3'
miRNA:   3'- gGCAGCUGCGG--------------UCUGCGaCUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 147046 0.71 0.635417
Target:  5'- gCCGUCGGCgGCCggucuaaGGACGgaG-CCGCGg -3'
miRNA:   3'- -GGCAGCUG-CGG-------UCUGCgaCuGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 146986 0.68 0.79488
Target:  5'- -gGUCGGCGCCGccggccGACGUcGGCgGCGg -3'
miRNA:   3'- ggCAGCUGCGGU------CUGCGaCUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 146684 0.66 0.892709
Target:  5'- aCGucUCGGCGCUcGAgGCcGACUGCGg -3'
miRNA:   3'- gGC--AGCUGCGGuCUgCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 146293 0.69 0.768604
Target:  5'- cUCGUCGuCGCgCAGGUGUUGACgggcucgccgaCGCGCg -3'
miRNA:   3'- -GGCAGCuGCG-GUCUGCGACUG-----------GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 145374 0.69 0.768604
Target:  5'- aCCGggcggaGACGCUccgcucGGugGCgcGCCGCGCg -3'
miRNA:   3'- -GGCag----CUGCGG------UCugCGacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 144987 0.7 0.72273
Target:  5'- gCGacCGGCGCCGGGCGUccGCCugGCGCa -3'
miRNA:   3'- gGCa-GCUGCGGUCUGCGacUGG--CGCG- -5'
10728 5' -58.5 NC_002794.1 + 144408 0.66 0.88629
Target:  5'- gCGUCG-CGCUGGGCccgagcgcccuGCUGcgccgagugcaGCCGUGCg -3'
miRNA:   3'- gGCAGCuGCGGUCUG-----------CGAC-----------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 144056 0.66 0.88629
Target:  5'- gCCGUCGAcuucuCGCCcGACGCgu-CCGaCGa -3'
miRNA:   3'- -GGCAGCU-----GCGGuCUGCGacuGGC-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.