miRNA display CGI


Results 81 - 100 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 143729 0.68 0.79488
Target:  5'- gCGUCGuccucgccCGCCGGACGCgccGCCGgGg -3'
miRNA:   3'- gGCAGCu-------GCGGUCUGCGac-UGGCgCg -5'
10728 5' -58.5 NC_002794.1 + 143656 0.68 0.786244
Target:  5'- gCGUgGACGgCAGccCGUUGuACCGCGUc -3'
miRNA:   3'- gGCAgCUGCgGUCu-GCGAC-UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 143459 0.66 0.898312
Target:  5'- cCCGcCGcGCGCgaugaacggcuggCAGAcgauguCGCUGGCCGCGg -3'
miRNA:   3'- -GGCaGC-UGCG-------------GUCU------GCGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 143272 0.69 0.7766
Target:  5'- cCCGgccCGGCGCCGGcCGCUcggggucgggcggGugCaGCGCg -3'
miRNA:   3'- -GGCa--GCUGCGGUCuGCGA-------------CugG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 143072 0.69 0.732076
Target:  5'- cCCG-CGGCGgCAGACGUaguggaGGuuGCGCg -3'
miRNA:   3'- -GGCaGCUGCgGUCUGCGa-----CUggCGCG- -5'
10728 5' -58.5 NC_002794.1 + 142650 0.72 0.607292
Target:  5'- cUCGUCGGguuuCCAGACGgucaUGGCCGCGUg -3'
miRNA:   3'- -GGCAGCUgc--GGUCUGCg---ACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 142533 0.68 0.803385
Target:  5'- gUCGUCGuGCGUgUAGAUGUUGcccuCCGCGCc -3'
miRNA:   3'- -GGCAGC-UGCG-GUCUGCGACu---GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 141702 0.69 0.768604
Target:  5'- cCCGUCGugGCCGaaccGGCGUUcGCCGauccgauGCa -3'
miRNA:   3'- -GGCAGCugCGGU----CUGCGAcUGGCg------CG- -5'
10728 5' -58.5 NC_002794.1 + 141595 0.68 0.811751
Target:  5'- cCCG-CGuCGCCGGGCGgCUcggcGACCGgcuCGCg -3'
miRNA:   3'- -GGCaGCuGCGGUCUGC-GA----CUGGC---GCG- -5'
10728 5' -58.5 NC_002794.1 + 141434 0.66 0.88629
Target:  5'- gCGggGGCGCCGGGgGCgccggGAgCgGCGCg -3'
miRNA:   3'- gGCagCUGCGGUCUgCGa----CU-GgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 140905 0.71 0.665454
Target:  5'- aCCG-CGugGCgGGaccugcaggcGCGCUGcCUGCGCa -3'
miRNA:   3'- -GGCaGCugCGgUC----------UGCGACuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 140466 0.69 0.774831
Target:  5'- aCCGgacccugcaagaacaGGCGCCcgauuaccGGGCGCUGuACCGCGa -3'
miRNA:   3'- -GGCag-------------CUGCGG--------UCUGCGAC-UGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 139990 0.68 0.79488
Target:  5'- gCG-CGACGCgGGACGgUGcggguggagGCCGCGg -3'
miRNA:   3'- gGCaGCUGCGgUCUGCgAC---------UGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 139464 0.67 0.861534
Target:  5'- gUCGUCGuGCGCCAgGACGgUGguguagaugggcgcgGgCGCGCu -3'
miRNA:   3'- -GGCAGC-UGCGGU-CUGCgAC---------------UgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 138884 0.71 0.643179
Target:  5'- gUCGUCGcucuCGCCuucuucacucgaucAGGUGCUGACCGCGg -3'
miRNA:   3'- -GGCAGCu---GCGG--------------UCUGCGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 138570 0.69 0.741345
Target:  5'- uCCGUCGuCGCUcgaucgAGGCGCgu-CgGCGCg -3'
miRNA:   3'- -GGCAGCuGCGG------UCUGCGacuGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 138429 0.68 0.786244
Target:  5'- cUCGUCGA-GCCgcGGugGC-GGCgGCGCc -3'
miRNA:   3'- -GGCAGCUgCGG--UCugCGaCUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 137983 0.68 0.79488
Target:  5'- uUGUCGccgcaGCGCUGGugcaGCUGGgCGCGCa -3'
miRNA:   3'- gGCAGC-----UGCGGUCug--CGACUgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 137572 0.68 0.827235
Target:  5'- gCCGUCGcCGCCGGGgccggagUGCgggGAgCCGcCGCc -3'
miRNA:   3'- -GGCAGCuGCGGUCU-------GCGa--CU-GGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 137411 0.74 0.475894
Target:  5'- gCGUCcgcgGACGCC--GCGgaGACCGCGCc -3'
miRNA:   3'- gGCAG----CUGCGGucUGCgaCUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.