miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 36953 0.66 0.904931
Target:  5'- gUCGcgCGGCGgCAGGCagucGCgcaggagGAUCGCGCg -3'
miRNA:   3'- -GGCa-GCUGCgGUCUG----CGa------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 192555 0.66 0.904931
Target:  5'- cCCGUCGuaGCGgCAGGCGCa---CGCGa -3'
miRNA:   3'- -GGCAGC--UGCgGUCUGCGacugGCGCg -5'
10728 5' -58.5 NC_002794.1 + 16406 0.65 0.90901
Target:  5'- gUCGUCGACucuuggcguuaccgGaCCcGACGCcGAguCCGCGCu -3'
miRNA:   3'- -GGCAGCUG--------------C-GGuCUGCGaCU--GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 63907 0.66 0.904931
Target:  5'- gCCGUCGcucGCGCCGcGAcCGCcgcccGGCCG-GCg -3'
miRNA:   3'- -GGCAGC---UGCGGU-CU-GCGa----CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 50765 0.66 0.904931
Target:  5'- cCCGggCGGCGgCGacGGCGCgucucgGGCgGCGCc -3'
miRNA:   3'- -GGCa-GCUGCgGU--CUGCGa-----CUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 34329 0.66 0.898924
Target:  5'- gCCGUC--CGCaAGGCGaC-GGCCGCGCc -3'
miRNA:   3'- -GGCAGcuGCGgUCUGC-GaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 34246 0.66 0.898924
Target:  5'- aCGcgCGGCuGCC-GcCGCaggcgGACCGCGCg -3'
miRNA:   3'- gGCa-GCUG-CGGuCuGCGa----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 42724 0.66 0.898312
Target:  5'- gCGUCcACGuCCAagucuucGACcgaGCUGACCGCGa -3'
miRNA:   3'- gGCAGcUGC-GGU-------CUG---CGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 143459 0.66 0.898312
Target:  5'- cCCGcCGcGCGCgaugaacggcuggCAGAcgauguCGCUGGCCGCGg -3'
miRNA:   3'- -GGCaGC-UGCG-------------GUCU------GCGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 104287 0.66 0.898924
Target:  5'- gCCGaacaggaucUCGG-GCCGGGUGCacuugagguUGGCCGCGCa -3'
miRNA:   3'- -GGC---------AGCUgCGGUCUGCG---------ACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 182941 0.66 0.898924
Target:  5'- -aGUcCGGCGCCGGGCucgaGCcGACgGCGg -3'
miRNA:   3'- ggCA-GCUGCGGUCUG----CGaCUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 117588 0.66 0.898924
Target:  5'- -aGUCGACGa-AGGC-CUGGCaCGCGUc -3'
miRNA:   3'- ggCAGCUGCggUCUGcGACUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 186756 0.66 0.898924
Target:  5'- aCGUaccaggGGCagGCCAGGCGCUccGACacguaGCGCg -3'
miRNA:   3'- gGCAg-----CUG--CGGUCUGCGA--CUGg----CGCG- -5'
10728 5' -58.5 NC_002794.1 + 113864 0.66 0.898924
Target:  5'- -aGUUccgGCCAGGCGCgcucGGCCGCGg -3'
miRNA:   3'- ggCAGcugCGGUCUGCGa---CUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 44242 0.66 0.898924
Target:  5'- gCCGggCGGCucgguGCCGGGCgGCUcGGCCGC-Cg -3'
miRNA:   3'- -GGCa-GCUG-----CGGUCUG-CGA-CUGGCGcG- -5'
10728 5' -58.5 NC_002794.1 + 43446 0.66 0.898924
Target:  5'- gUGggggCGAUGUCgaAGugGCUGACCuuGCa -3'
miRNA:   3'- gGCa---GCUGCGG--UCugCGACUGGcgCG- -5'
10728 5' -58.5 NC_002794.1 + 94994 0.66 0.898924
Target:  5'- uCUGUCGcCGCUugcuGuCGCUGAUgGgGCg -3'
miRNA:   3'- -GGCAGCuGCGGu---CuGCGACUGgCgCG- -5'
10728 5' -58.5 NC_002794.1 + 182994 0.66 0.898924
Target:  5'- gCCGgCGcuuCGCCgcGGGCGCc--CCGCGCg -3'
miRNA:   3'- -GGCaGCu--GCGG--UCUGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 19784 0.66 0.898924
Target:  5'- uCCGggugcuccUGACGCUGcucCGCUcgGACCGCGCg -3'
miRNA:   3'- -GGCa-------GCUGCGGUcu-GCGA--CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 149658 0.66 0.898924
Target:  5'- gCCGagGAgGCCgagcggGGGCGCgucgcgcucgacUGGCCGCGg -3'
miRNA:   3'- -GGCagCUgCGG------UCUGCG------------ACUGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.