miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10729 3' -50.3 NC_002794.1 + 830 0.66 0.998776
Target:  5'- uUUCcUC--CGGUCCCCGGcGCgUGCg -3'
miRNA:   3'- cAAGuAGaaGCUAGGGGUCaUGgACG- -5'
10729 3' -50.3 NC_002794.1 + 64613 0.66 0.998679
Target:  5'- --aCGUCUUCGucccgacccgcgCCCCcgAGcGCCUGCu -3'
miRNA:   3'- caaGUAGAAGCua----------GGGG--UCaUGGACG- -5'
10729 3' -50.3 NC_002794.1 + 105601 0.66 0.998225
Target:  5'- aGUUCGUCUUCGGcggUCgUCAGgcUCgGCg -3'
miRNA:   3'- -CAAGUAGAAGCU---AGgGGUCauGGaCG- -5'
10729 3' -50.3 NC_002794.1 + 62163 0.66 0.99748
Target:  5'- --gCGUCUUCGAgaccacCCCCGGcUGCaaGCu -3'
miRNA:   3'- caaGUAGAAGCUa-----GGGGUC-AUGgaCG- -5'
10729 3' -50.3 NC_002794.1 + 154329 0.66 0.997018
Target:  5'- --gCGUCggUCG-UCCCgGGUGCCgcgGCc -3'
miRNA:   3'- caaGUAGa-AGCuAGGGgUCAUGGa--CG- -5'
10729 3' -50.3 NC_002794.1 + 107331 0.67 0.99649
Target:  5'- gGUUCggCUUCGGUCCguggguCCGGUcGCC-GCg -3'
miRNA:   3'- -CAAGuaGAAGCUAGG------GGUCA-UGGaCG- -5'
10729 3' -50.3 NC_002794.1 + 73762 0.67 0.994423
Target:  5'- --gCGUCUUCGAggaacuggcgCUCCAGguCCUGCu -3'
miRNA:   3'- caaGUAGAAGCUa---------GGGGUCauGGACG- -5'
10729 3' -50.3 NC_002794.1 + 98089 0.68 0.99147
Target:  5'- -gUCcgCUUUGGcggguaUCCCCGGUGCCa-- -3'
miRNA:   3'- caAGuaGAAGCU------AGGGGUCAUGGacg -5'
10729 3' -50.3 NC_002794.1 + 183951 0.68 0.99147
Target:  5'- --aCGUCgacgCGGUCCCCGucACgCUGCg -3'
miRNA:   3'- caaGUAGaa--GCUAGGGGUcaUG-GACG- -5'
10729 3' -50.3 NC_002794.1 + 74577 0.68 0.987399
Target:  5'- --aCGUCcUCuccCCCCGGUAUCUGCu -3'
miRNA:   3'- caaGUAGaAGcuaGGGGUCAUGGACG- -5'
10729 3' -50.3 NC_002794.1 + 57300 0.68 0.987399
Target:  5'- -cUCAaccgCUaccgCGA-CCCCgAGUACCUGCa -3'
miRNA:   3'- caAGUa---GAa---GCUaGGGG-UCAUGGACG- -5'
10729 3' -50.3 NC_002794.1 + 70835 0.71 0.946901
Target:  5'- aGUUCuUCacgCGAUCCCCGacGUGCCgGCc -3'
miRNA:   3'- -CAAGuAGaa-GCUAGGGGU--CAUGGaCG- -5'
10729 3' -50.3 NC_002794.1 + 37454 0.72 0.91579
Target:  5'- -cUgGUCUUCGGcgaagacgaUCCCCAGgaagcCCUGCg -3'
miRNA:   3'- caAgUAGAAGCU---------AGGGGUCau---GGACG- -5'
10729 3' -50.3 NC_002794.1 + 152477 1.14 0.006593
Target:  5'- cGUUCAUCUUCGAUCCCCAGUACCUGCa -3'
miRNA:   3'- -CAAGUAGAAGCUAGGGGUCAUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.