miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10729 5' -52.5 NC_002794.1 + 33141 0.66 0.990272
Target:  5'- --cCAGGUGCUgcgggacccgaCCguguuccgcaagcAGAUCUUCUACGGg -3'
miRNA:   3'- cuuGUCCACGA-----------GG-------------UCUAGGAGAUGCU- -5'
10729 5' -52.5 NC_002794.1 + 13785 0.66 0.984242
Target:  5'- --cCGGGUgGCUCCGGccGUCUUCgcgACGGg -3'
miRNA:   3'- cuuGUCCA-CGAGGUC--UAGGAGa--UGCU- -5'
10729 5' -52.5 NC_002794.1 + 190375 0.66 0.984242
Target:  5'- cAGCGGGUGCUCCcGcUCCUgcauCGAg -3'
miRNA:   3'- cUUGUCCACGAGGuCuAGGAgau-GCU- -5'
10729 5' -52.5 NC_002794.1 + 113070 0.67 0.977936
Target:  5'- -cGCAGGUaCUCCuGGAgcgCCUCgGCGAa -3'
miRNA:   3'- cuUGUCCAcGAGG-UCUa--GGAGaUGCU- -5'
10729 5' -52.5 NC_002794.1 + 114689 0.67 0.972805
Target:  5'- -cGCAGG-GC-CCGGA-CCUcCUGCGAg -3'
miRNA:   3'- cuUGUCCaCGaGGUCUaGGA-GAUGCU- -5'
10729 5' -52.5 NC_002794.1 + 70562 0.68 0.966863
Target:  5'- cGAGCc---GCUCCAGAUCgCUCUGcCGAg -3'
miRNA:   3'- -CUUGuccaCGAGGUCUAG-GAGAU-GCU- -5'
10729 5' -52.5 NC_002794.1 + 80331 0.68 0.960058
Target:  5'- uGAGC-GG-GCUCCuGAgCCUCUGCGc -3'
miRNA:   3'- -CUUGuCCaCGAGGuCUaGGAGAUGCu -5'
10729 5' -52.5 NC_002794.1 + 71363 0.68 0.956317
Target:  5'- cAGCAGGUGCggcagccgccCCAGGaccUCCUCcACGGu -3'
miRNA:   3'- cUUGUCCACGa---------GGUCU---AGGAGaUGCU- -5'
10729 5' -52.5 NC_002794.1 + 145086 0.68 0.956317
Target:  5'- cAGCAcGGUGUUgaaCCGGAcggUCCUCUACGc -3'
miRNA:   3'- cUUGU-CCACGA---GGUCU---AGGAGAUGCu -5'
10729 5' -52.5 NC_002794.1 + 136567 0.69 0.943691
Target:  5'- -cGCAGGUGCUCgGGcgUCUCgaucCGAc -3'
miRNA:   3'- cuUGUCCACGAGgUCuaGGAGau--GCU- -5'
10729 5' -52.5 NC_002794.1 + 45783 0.69 0.943691
Target:  5'- gGGACAGGgacaGCUCCAGGUgCUCccuCGu -3'
miRNA:   3'- -CUUGUCCa---CGAGGUCUAgGAGau-GCu -5'
10729 5' -52.5 NC_002794.1 + 136646 0.71 0.892709
Target:  5'- gGGGCAGGUGCguguuggUCAaGUCCUCcACGAg -3'
miRNA:   3'- -CUUGUCCACGa------GGUcUAGGAGaUGCU- -5'
10729 5' -52.5 NC_002794.1 + 73772 0.71 0.892709
Target:  5'- gGAACuGGcGCUCCAGGUCCUgCUGu-- -3'
miRNA:   3'- -CUUGuCCaCGAGGUCUAGGA-GAUgcu -5'
10729 5' -52.5 NC_002794.1 + 60088 0.74 0.758724
Target:  5'- -cGCAGGUGCUCCAcGGccagcuggCCgUCUGCGAg -3'
miRNA:   3'- cuUGUCCACGAGGU-CUa-------GG-AGAUGCU- -5'
10729 5' -52.5 NC_002794.1 + 152511 1.09 0.007274
Target:  5'- cGAACAGGUGCUCCAGAUCCUCUACGAc -3'
miRNA:   3'- -CUUGUCCACGAGGUCUAGGAGAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.