miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1073 5' -53.6 NC_000929.1 + 16586 0.71 0.42222
Target:  5'- aCCCGCccaauGGCuggaacUGCCGCuGUcgCGUCCg -3'
miRNA:   3'- -GGGCG-----UCGuaa---ACGGCG-CGuaGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 17451 0.69 0.512823
Target:  5'- aCCGCGcCAUUccccgagugauggcUGCgGCGCugcuGUCAUCCa -3'
miRNA:   3'- gGGCGUcGUAA--------------ACGgCGCG----UAGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 15547 0.69 0.538136
Target:  5'- gCCCGCAGUAUUaaCCGUGaccugauUUAUCCc -3'
miRNA:   3'- -GGGCGUCGUAAacGGCGCgu-----AGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 3026 0.67 0.605865
Target:  5'- gCUGCGGCAg--GCCGUGaaUAUCG-CCg -3'
miRNA:   3'- gGGCGUCGUaaaCGGCGC--GUAGUaGG- -5'
1073 5' -53.6 NC_000929.1 + 20662 0.67 0.605865
Target:  5'- gCCGCGcGCuuuguucUGCCGCuuacCGUCGUCCc -3'
miRNA:   3'- gGGCGU-CGuaa----ACGGCGc---GUAGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 20264 0.66 0.719434
Target:  5'- gCCGaCAGCG--UGCUGUcugugguaucuGCAUCGUCa -3'
miRNA:   3'- gGGC-GUCGUaaACGGCG-----------CGUAGUAGg -5'
1073 5' -53.6 NC_000929.1 + 16059 0.71 0.42222
Target:  5'- gCCGCAGCAgaccaUUgaucuggcguaUGCCGCGCG-CcUCCc -3'
miRNA:   3'- gGGCGUCGU-----AA-----------ACGGCGCGUaGuAGG- -5'
1073 5' -53.6 NC_000929.1 + 33667 0.66 0.708293
Target:  5'- aCUCaCAGCuacgGCUGgGCAUCAuuUCCg -3'
miRNA:   3'- -GGGcGUCGuaaaCGGCgCGUAGU--AGG- -5'
1073 5' -53.6 NC_000929.1 + 7443 0.66 0.697071
Target:  5'- -aUGCGGCc-UUGCgCGgGUGUCAUCCc -3'
miRNA:   3'- ggGCGUCGuaAACG-GCgCGUAGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 15036 0.66 0.674435
Target:  5'- -aUGCAGCGccaccgGCaCGCGCAUUuUCCc -3'
miRNA:   3'- ggGCGUCGUaaa---CG-GCGCGUAGuAGG- -5'
1073 5' -53.6 NC_000929.1 + 13898 0.66 0.663047
Target:  5'- gCCGUGGCGcaUUUGUgGUGUcagcgauucaaaAUCGUCCg -3'
miRNA:   3'- gGGCGUCGU--AAACGgCGCG------------UAGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 8769 0.67 0.651627
Target:  5'- gCCGUcauGGCAUcauaGCCGCGCAguUCAcgaCCg -3'
miRNA:   3'- gGGCG---UCGUAaa--CGGCGCGU--AGUa--GG- -5'
1073 5' -53.6 NC_000929.1 + 28506 0.67 0.651627
Target:  5'- gUCUGCGGCG-UUGCUcacgcaggGCGCGggccugugCAUCCu -3'
miRNA:   3'- -GGGCGUCGUaAACGG--------CGCGUa-------GUAGG- -5'
1073 5' -53.6 NC_000929.1 + 3095 0.67 0.613864
Target:  5'- uCUgGCGGCGgcgauauucacggccUGCCGCaGCAUCAUUa -3'
miRNA:   3'- -GGgCGUCGUaa-------------ACGGCG-CGUAGUAGg -5'
1073 5' -53.6 NC_000929.1 + 3556 0.69 0.516098
Target:  5'- gUUGCAGCAUUUGUgaaacaCGCuCGUUAUCCc -3'
miRNA:   3'- gGGCGUCGUAAACG------GCGcGUAGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 20678 0.69 0.509556
Target:  5'- gCCGaAGCAUcUGCCaGUgccuguucugccacgGCAUCAUCCg -3'
miRNA:   3'- gGGCgUCGUAaACGG-CG---------------CGUAGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 16924 0.69 0.494432
Target:  5'- aCCUGCucacGCA---GCUGCGCGUCAcgaacuUCCa -3'
miRNA:   3'- -GGGCGu---CGUaaaCGGCGCGUAGU------AGG- -5'
1073 5' -53.6 NC_000929.1 + 29464 0.69 0.494432
Target:  5'- uCCUGC-GCAauaucGCCGCGUccguUCGUCCa -3'
miRNA:   3'- -GGGCGuCGUaaa--CGGCGCGu---AGUAGG- -5'
1073 5' -53.6 NC_000929.1 + 31075 1.15 0.000355
Target:  5'- uCCCGCAGCAUUUGCCGCGCAUCAUCCg -3'
miRNA:   3'- -GGGCGUCGUAAACGGCGCGUAGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.