miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 3' -54.2 NC_002794.1 + 148217 0.66 0.983566
Target:  5'- cGCUCGAUC--GGUC-UCCGGU-CgGCg -3'
miRNA:   3'- -CGGGCUAGcaCCAGuAGGUCAaGgCG- -5'
10730 3' -54.2 NC_002794.1 + 133320 0.66 0.983566
Target:  5'- uCCCGAUCGUGuacUCuUCCAGcgUCuCGUu -3'
miRNA:   3'- cGGGCUAGCACc--AGuAGGUCa-AG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 111434 0.66 0.983566
Target:  5'- cGCCaGAUCGgcaGUCGgggCgGGUUCUGCu -3'
miRNA:   3'- -CGGgCUAGCac-CAGUa--GgUCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 122675 0.66 0.981641
Target:  5'- gGCCCGGcUGUgccGGUCGcgCCAGcgCCGg -3'
miRNA:   3'- -CGGGCUaGCA---CCAGUa-GGUCaaGGCg -5'
10730 3' -54.2 NC_002794.1 + 193426 0.66 0.981641
Target:  5'- cGCCCG-UCGUccaGcCGUCCGGcacgCCGCc -3'
miRNA:   3'- -CGGGCuAGCAc--CaGUAGGUCaa--GGCG- -5'
10730 3' -54.2 NC_002794.1 + 130608 0.66 0.979552
Target:  5'- -gCCGAUCGUGGg---CCGGUugacgguguUCgGCg -3'
miRNA:   3'- cgGGCUAGCACCaguaGGUCA---------AGgCG- -5'
10730 3' -54.2 NC_002794.1 + 154311 0.66 0.979552
Target:  5'- aGCCUccucgggaGAgcggCGUcGGUCGUCCcgGGUgCCGCg -3'
miRNA:   3'- -CGGG--------CUa---GCA-CCAGUAGG--UCAaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 154815 0.66 0.977291
Target:  5'- ---aGAUCGgGGUCGUUCAaGgcgUCCGCg -3'
miRNA:   3'- cgggCUAGCaCCAGUAGGU-Ca--AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 43731 0.66 0.975849
Target:  5'- aCCCGAUCGgccuucuuggccaccUGGgug-CC-GUUCCGCa -3'
miRNA:   3'- cGGGCUAGC---------------ACCaguaGGuCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 149871 0.66 0.974851
Target:  5'- cGCCCGcUCGgggggucugGGUCAUCguGacCCGg -3'
miRNA:   3'- -CGGGCuAGCa--------CCAGUAGguCaaGGCg -5'
10730 3' -54.2 NC_002794.1 + 143021 0.66 0.974851
Target:  5'- cGUgCGGUCGgccgGGUCGacgUgCAGggCCGCc -3'
miRNA:   3'- -CGgGCUAGCa---CCAGU---AgGUCaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 106347 0.66 0.974851
Target:  5'- cGCCgGGUCGacggcgGG-CGggcgCCGGUUCgCGCg -3'
miRNA:   3'- -CGGgCUAGCa-----CCaGUa---GGUCAAG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 105491 0.66 0.974851
Target:  5'- cUCCGGUCGUGGagccgccgCcgCCGGUcgcgCCGUc -3'
miRNA:   3'- cGGGCUAGCACCa-------GuaGGUCAa---GGCG- -5'
10730 3' -54.2 NC_002794.1 + 45633 0.66 0.971952
Target:  5'- aCCCGAaacaGUGGUCGgaguggcagaagcUCCGcGggCCGCa -3'
miRNA:   3'- cGGGCUag--CACCAGU-------------AGGU-CaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 194239 0.66 0.971677
Target:  5'- cGUCUGAUCGUGGUCcgCgaaCAGcucgcccgacgCCGCc -3'
miRNA:   3'- -CGGGCUAGCACCAGuaG---GUCaa---------GGCG- -5'
10730 3' -54.2 NC_002794.1 + 111998 0.67 0.966392
Target:  5'- cGCCCug-CGcGGUCA-CCAGUcggcgCCGCc -3'
miRNA:   3'- -CGGGcuaGCaCCAGUaGGUCAa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 107336 0.67 0.966392
Target:  5'- gGCuUCGGUcCGUGG--GUCCGGUcgCCGCg -3'
miRNA:   3'- -CG-GGCUA-GCACCagUAGGUCAa-GGCG- -5'
10730 3' -54.2 NC_002794.1 + 150832 0.67 0.963172
Target:  5'- -gCUGAUCGUcGUCAgcUCCAGcggcggCCGCg -3'
miRNA:   3'- cgGGCUAGCAcCAGU--AGGUCaa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 60886 0.67 0.963172
Target:  5'- -aUCGGcgcCGUGGUCcccAUCCcGUUCCGCc -3'
miRNA:   3'- cgGGCUa--GCACCAG---UAGGuCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 37139 0.67 0.963172
Target:  5'- cGCCgGGUCGaGGgcgCAgcUCCAGUcgcUCCGg -3'
miRNA:   3'- -CGGgCUAGCaCCa--GU--AGGUCA---AGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.