miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 3' -54.2 NC_002794.1 + 151999 1.15 0.002703
Target:  5'- cGCCCGAUCGUGGUCAUCCAGUUCCGCa -3'
miRNA:   3'- -CGGGCUAGCACCAGUAGGUCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 111668 0.76 0.569048
Target:  5'- cGCCCG-UCGgauacGGUCGUCCAGg-CCGUg -3'
miRNA:   3'- -CGGGCuAGCa----CCAGUAGGUCaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 67180 0.74 0.669236
Target:  5'- aGCCCGAUCG-GGUCGgaccgaaaagcgUCCGGgcggUgCGCu -3'
miRNA:   3'- -CGGGCUAGCaCCAGU------------AGGUCa---AgGCG- -5'
10730 3' -54.2 NC_002794.1 + 145352 0.73 0.747603
Target:  5'- gGCCCGAgcugggggUGUGGUCA-CCGGgcggagacgcUCCGCu -3'
miRNA:   3'- -CGGGCUa-------GCACCAGUaGGUCa---------AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 189296 0.73 0.747603
Target:  5'- cGCCCaGGagGUGGUCGUgCAGUUCgGg -3'
miRNA:   3'- -CGGG-CUagCACCAGUAgGUCAAGgCg -5'
10730 3' -54.2 NC_002794.1 + 112221 0.73 0.747603
Target:  5'- gGCCCGcUCcaGGgCGUCCAGggCCGCc -3'
miRNA:   3'- -CGGGCuAGcaCCaGUAGGUCaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 179093 0.72 0.811197
Target:  5'- cGCCCGAggaacCGUccGGUCGUCCGcggUCCGg -3'
miRNA:   3'- -CGGGCUa----GCA--CCAGUAGGUca-AGGCg -5'
10730 3' -54.2 NC_002794.1 + 188312 0.71 0.81972
Target:  5'- gGCCCG-UCGUcGUCGUCCucGUcgCCGCc -3'
miRNA:   3'- -CGGGCuAGCAcCAGUAGGu-CAa-GGCG- -5'
10730 3' -54.2 NC_002794.1 + 119092 0.71 0.852094
Target:  5'- cGCCCGGUUGcUGGUgggCGUCCAGaUCggggaCGCa -3'
miRNA:   3'- -CGGGCUAGC-ACCA---GUAGGUCaAG-----GCG- -5'
10730 3' -54.2 NC_002794.1 + 169582 0.71 0.852094
Target:  5'- aCCCGAUCG---UCGUCU-GUUCCGCa -3'
miRNA:   3'- cGGGCUAGCaccAGUAGGuCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 37984 0.7 0.867154
Target:  5'- -gCCGAUCGcGGUCAgCCGGgccacgCCGUa -3'
miRNA:   3'- cgGGCUAGCaCCAGUaGGUCaa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 117751 0.7 0.877213
Target:  5'- gGUCCGcgCGUggugcgcagcaGGUCGUCCAGcaccggguucauggUCCGCc -3'
miRNA:   3'- -CGGGCuaGCA-----------CCAGUAGGUCa-------------AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 185190 0.7 0.881398
Target:  5'- gGCgCGGUCGgcgcGGUCAUCgCGGcucgcgCCGCg -3'
miRNA:   3'- -CGgGCUAGCa---CCAGUAG-GUCaa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 194401 0.7 0.888202
Target:  5'- cGCCCGGUCGUucgCGUCCGccaCCGCc -3'
miRNA:   3'- -CGGGCUAGCAccaGUAGGUcaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 190531 0.7 0.894787
Target:  5'- -gCCGAUCGUcGUCcaCCAGcggUCCGCg -3'
miRNA:   3'- cgGGCUAGCAcCAGuaGGUCa--AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 137384 0.7 0.894787
Target:  5'- aGCgCCGAcgCGgguccGGUCuGUCCGGcgUCCGCg -3'
miRNA:   3'- -CG-GGCUa-GCa----CCAG-UAGGUCa-AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 35562 0.69 0.907291
Target:  5'- cGCgCGcgCGUGGUgGcCCAGgcguucUUCCGCa -3'
miRNA:   3'- -CGgGCuaGCACCAgUaGGUC------AAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 179786 0.69 0.918888
Target:  5'- cGCCCGGUCaccGUCGUCaGGUUCCa- -3'
miRNA:   3'- -CGGGCUAGcacCAGUAGgUCAAGGcg -5'
10730 3' -54.2 NC_002794.1 + 47596 0.69 0.924341
Target:  5'- cGCCCGAUCGccagGGUCAggUCUucgUCCucGCa -3'
miRNA:   3'- -CGGGCUAGCa---CCAGU--AGGucaAGG--CG- -5'
10730 3' -54.2 NC_002794.1 + 147266 0.69 0.924341
Target:  5'- cGCUCGAgcugcCGUGGcCGUCCGG--CUGCa -3'
miRNA:   3'- -CGGGCUa----GCACCaGUAGGUCaaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.