miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 3' -54.2 NC_002794.1 + 48335 0.67 0.963172
Target:  5'- gGCCCGGUacucccgGUGGUacgCCuGcUCCGCg -3'
miRNA:   3'- -CGGGCUAg------CACCAguaGGuCaAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 153365 0.67 0.959743
Target:  5'- gGCCCGGcugcgcgcccUCGUGGUCgAUCUg--UCCGa -3'
miRNA:   3'- -CGGGCU----------AGCACCAG-UAGGucaAGGCg -5'
10730 3' -54.2 NC_002794.1 + 113652 0.67 0.959743
Target:  5'- gGCCCGG-CGUccucGG-CGUCCAGcgCgGCg -3'
miRNA:   3'- -CGGGCUaGCA----CCaGUAGGUCaaGgCG- -5'
10730 3' -54.2 NC_002794.1 + 49041 0.67 0.956101
Target:  5'- gGCgCGGUCGUcagCGUCCAGggCgCGCa -3'
miRNA:   3'- -CGgGCUAGCAccaGUAGGUCaaG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 124382 0.68 0.952637
Target:  5'- cGCCuCGGUCGcggcggcgcgucgccGGUCGUCgGGgcgccgUCCGCc -3'
miRNA:   3'- -CGG-GCUAGCa--------------CCAGUAGgUCa-----AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 181505 0.68 0.952241
Target:  5'- aGCCCGAcgcUCGUccacGUCGUCC-GUUcgcCCGCc -3'
miRNA:   3'- -CGGGCU---AGCAc---CAGUAGGuCAA---GGCG- -5'
10730 3' -54.2 NC_002794.1 + 115856 0.68 0.952241
Target:  5'- gGCCUGGgacgCGcgaggGGUCcggggcGUCCGGggcgUCCGCg -3'
miRNA:   3'- -CGGGCUa---GCa----CCAG------UAGGUCa---AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 100485 0.68 0.948159
Target:  5'- aCCUGGacgaCGUGGUCAUUCAGaUCuCGUg -3'
miRNA:   3'- cGGGCUa---GCACCAGUAGGUCaAG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 154394 0.68 0.948159
Target:  5'- cGCCCGuucgCGUGGUg--CCGGUggCCaGCg -3'
miRNA:   3'- -CGGGCua--GCACCAguaGGUCAa-GG-CG- -5'
10730 3' -54.2 NC_002794.1 + 35658 0.68 0.939319
Target:  5'- cGCCCGGUcuccgaCGUGGUCAaCgAGgucaUCCGg -3'
miRNA:   3'- -CGGGCUA------GCACCAGUaGgUCa---AGGCg -5'
10730 3' -54.2 NC_002794.1 + 101217 0.68 0.939319
Target:  5'- cGCCCGGcaGaUGGUCGUgcCCAcGUUUCGCu -3'
miRNA:   3'- -CGGGCUagC-ACCAGUA--GGU-CAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 121198 0.68 0.934557
Target:  5'- aUCCGAUCGgGGUCGacUUCGGgggcggCCGCc -3'
miRNA:   3'- cGGGCUAGCaCCAGU--AGGUCaa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 70057 0.68 0.934557
Target:  5'- cGCCCGGUCG-GG-CggCCGcagCCGCa -3'
miRNA:   3'- -CGGGCUAGCaCCaGuaGGUcaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 147266 0.69 0.924341
Target:  5'- cGCUCGAgcugcCGUGGcCGUCCGG--CUGCa -3'
miRNA:   3'- -CGGGCUa----GCACCaGUAGGUCaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 47596 0.69 0.924341
Target:  5'- cGCCCGAUCGccagGGUCAggUCUucgUCCucGCa -3'
miRNA:   3'- -CGGGCUAGCa---CCAGU--AGGucaAGG--CG- -5'
10730 3' -54.2 NC_002794.1 + 139449 0.69 0.924341
Target:  5'- cGCgCCGAUCGgcaGGUCGUCguGcgCCa- -3'
miRNA:   3'- -CG-GGCUAGCa--CCAGUAGguCaaGGcg -5'
10730 3' -54.2 NC_002794.1 + 179786 0.69 0.918888
Target:  5'- cGCCCGGUCaccGUCGUCaGGUUCCa- -3'
miRNA:   3'- -CGGGCUAGcacCAGUAGgUCAAGGcg -5'
10730 3' -54.2 NC_002794.1 + 35562 0.69 0.907291
Target:  5'- cGCgCGcgCGUGGUgGcCCAGgcguucUUCCGCa -3'
miRNA:   3'- -CGgGCuaGCACCAgUaGGUC------AAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 190531 0.7 0.894787
Target:  5'- -gCCGAUCGUcGUCcaCCAGcggUCCGCg -3'
miRNA:   3'- cgGGCUAGCAcCAGuaGGUCa--AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 137384 0.7 0.894787
Target:  5'- aGCgCCGAcgCGgguccGGUCuGUCCGGcgUCCGCg -3'
miRNA:   3'- -CG-GGCUa-GCa----CCAG-UAGGUCa-AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.