miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 3' -54.2 NC_002794.1 + 35562 0.69 0.907291
Target:  5'- cGCgCGcgCGUGGUgGcCCAGgcguucUUCCGCa -3'
miRNA:   3'- -CGgGCuaGCACCAgUaGGUC------AAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 35658 0.68 0.939319
Target:  5'- cGCCCGGUcuccgaCGUGGUCAaCgAGgucaUCCGg -3'
miRNA:   3'- -CGGGCUA------GCACCAGUaGgUCa---AGGCg -5'
10730 3' -54.2 NC_002794.1 + 37139 0.67 0.963172
Target:  5'- cGCCgGGUCGaGGgcgCAgcUCCAGUcgcUCCGg -3'
miRNA:   3'- -CGGgCUAGCaCCa--GU--AGGUCA---AGGCg -5'
10730 3' -54.2 NC_002794.1 + 37984 0.7 0.867154
Target:  5'- -gCCGAUCGcGGUCAgCCGGgccacgCCGUa -3'
miRNA:   3'- cgGGCUAGCaCCAGUaGGUCaa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 43731 0.66 0.975849
Target:  5'- aCCCGAUCGgccuucuuggccaccUGGgug-CC-GUUCCGCa -3'
miRNA:   3'- cGGGCUAGC---------------ACCaguaGGuCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 45633 0.66 0.971952
Target:  5'- aCCCGAaacaGUGGUCGgaguggcagaagcUCCGcGggCCGCa -3'
miRNA:   3'- cGGGCUag--CACCAGU-------------AGGU-CaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 47596 0.69 0.924341
Target:  5'- cGCCCGAUCGccagGGUCAggUCUucgUCCucGCa -3'
miRNA:   3'- -CGGGCUAGCa---CCAGU--AGGucaAGG--CG- -5'
10730 3' -54.2 NC_002794.1 + 48335 0.67 0.963172
Target:  5'- gGCCCGGUacucccgGUGGUacgCCuGcUCCGCg -3'
miRNA:   3'- -CGGGCUAg------CACCAguaGGuCaAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 49041 0.67 0.956101
Target:  5'- gGCgCGGUCGUcagCGUCCAGggCgCGCa -3'
miRNA:   3'- -CGgGCUAGCAccaGUAGGUCaaG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 60886 0.67 0.963172
Target:  5'- -aUCGGcgcCGUGGUCcccAUCCcGUUCCGCc -3'
miRNA:   3'- cgGGCUa--GCACCAG---UAGGuCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 67180 0.74 0.669236
Target:  5'- aGCCCGAUCG-GGUCGgaccgaaaagcgUCCGGgcggUgCGCu -3'
miRNA:   3'- -CGGGCUAGCaCCAGU------------AGGUCa---AgGCG- -5'
10730 3' -54.2 NC_002794.1 + 70057 0.68 0.934557
Target:  5'- cGCCCGGUCG-GG-CggCCGcagCCGCa -3'
miRNA:   3'- -CGGGCUAGCaCCaGuaGGUcaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 100485 0.68 0.948159
Target:  5'- aCCUGGacgaCGUGGUCAUUCAGaUCuCGUg -3'
miRNA:   3'- cGGGCUa---GCACCAGUAGGUCaAG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 101217 0.68 0.939319
Target:  5'- cGCCCGGcaGaUGGUCGUgcCCAcGUUUCGCu -3'
miRNA:   3'- -CGGGCUagC-ACCAGUA--GGU-CAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 105491 0.66 0.974851
Target:  5'- cUCCGGUCGUGGagccgccgCcgCCGGUcgcgCCGUc -3'
miRNA:   3'- cGGGCUAGCACCa-------GuaGGUCAa---GGCG- -5'
10730 3' -54.2 NC_002794.1 + 106347 0.66 0.974851
Target:  5'- cGCCgGGUCGacggcgGG-CGggcgCCGGUUCgCGCg -3'
miRNA:   3'- -CGGgCUAGCa-----CCaGUa---GGUCAAG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 107336 0.67 0.966392
Target:  5'- gGCuUCGGUcCGUGG--GUCCGGUcgCCGCg -3'
miRNA:   3'- -CG-GGCUA-GCACCagUAGGUCAa-GGCG- -5'
10730 3' -54.2 NC_002794.1 + 111434 0.66 0.983566
Target:  5'- cGCCaGAUCGgcaGUCGgggCgGGUUCUGCu -3'
miRNA:   3'- -CGGgCUAGCac-CAGUa--GgUCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 111668 0.76 0.569048
Target:  5'- cGCCCG-UCGgauacGGUCGUCCAGg-CCGUg -3'
miRNA:   3'- -CGGGCuAGCa----CCAGUAGGUCaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 111998 0.67 0.966392
Target:  5'- cGCCCug-CGcGGUCA-CCAGUcggcgCCGCc -3'
miRNA:   3'- -CGGGcuaGCaCCAGUaGGUCAa----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.