miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 3' -54.2 NC_002794.1 + 154311 0.66 0.979552
Target:  5'- aGCCUccucgggaGAgcggCGUcGGUCGUCCcgGGUgCCGCg -3'
miRNA:   3'- -CGGG--------CUa---GCA-CCAGUAGG--UCAaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 154394 0.68 0.948159
Target:  5'- cGCCCGuucgCGUGGUg--CCGGUggCCaGCg -3'
miRNA:   3'- -CGGGCua--GCACCAguaGGUCAa-GG-CG- -5'
10730 3' -54.2 NC_002794.1 + 154815 0.66 0.977291
Target:  5'- ---aGAUCGgGGUCGUUCAaGgcgUCCGCg -3'
miRNA:   3'- cgggCUAGCaCCAGUAGGU-Ca--AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 169582 0.71 0.852094
Target:  5'- aCCCGAUCG---UCGUCU-GUUCCGCa -3'
miRNA:   3'- cGGGCUAGCaccAGUAGGuCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 179093 0.72 0.811197
Target:  5'- cGCCCGAggaacCGUccGGUCGUCCGcggUCCGg -3'
miRNA:   3'- -CGGGCUa----GCA--CCAGUAGGUca-AGGCg -5'
10730 3' -54.2 NC_002794.1 + 179786 0.69 0.918888
Target:  5'- cGCCCGGUCaccGUCGUCaGGUUCCa- -3'
miRNA:   3'- -CGGGCUAGcacCAGUAGgUCAAGGcg -5'
10730 3' -54.2 NC_002794.1 + 181505 0.68 0.952241
Target:  5'- aGCCCGAcgcUCGUccacGUCGUCC-GUUcgcCCGCc -3'
miRNA:   3'- -CGGGCU---AGCAc---CAGUAGGuCAA---GGCG- -5'
10730 3' -54.2 NC_002794.1 + 185190 0.7 0.881398
Target:  5'- gGCgCGGUCGgcgcGGUCAUCgCGGcucgcgCCGCg -3'
miRNA:   3'- -CGgGCUAGCa---CCAGUAG-GUCaa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 188312 0.71 0.81972
Target:  5'- gGCCCG-UCGUcGUCGUCCucGUcgCCGCc -3'
miRNA:   3'- -CGGGCuAGCAcCAGUAGGu-CAa-GGCG- -5'
10730 3' -54.2 NC_002794.1 + 189296 0.73 0.747603
Target:  5'- cGCCCaGGagGUGGUCGUgCAGUUCgGg -3'
miRNA:   3'- -CGGG-CUagCACCAGUAgGUCAAGgCg -5'
10730 3' -54.2 NC_002794.1 + 190531 0.7 0.894787
Target:  5'- -gCCGAUCGUcGUCcaCCAGcggUCCGCg -3'
miRNA:   3'- cgGGCUAGCAcCAGuaGGUCa--AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 193426 0.66 0.981641
Target:  5'- cGCCCG-UCGUccaGcCGUCCGGcacgCCGCc -3'
miRNA:   3'- -CGGGCuAGCAc--CaGUAGGUCaa--GGCG- -5'
10730 3' -54.2 NC_002794.1 + 194239 0.66 0.971677
Target:  5'- cGUCUGAUCGUGGUCcgCgaaCAGcucgcccgacgCCGCc -3'
miRNA:   3'- -CGGGCUAGCACCAGuaG---GUCaa---------GGCG- -5'
10730 3' -54.2 NC_002794.1 + 194401 0.7 0.888202
Target:  5'- cGCCCGGUCGUucgCGUCCGccaCCGCc -3'
miRNA:   3'- -CGGGCUAGCAccaGUAGGUcaaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.