miRNA display CGI


Results 41 - 54 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 3' -54.2 NC_002794.1 + 45633 0.66 0.971952
Target:  5'- aCCCGAaacaGUGGUCGgaguggcagaagcUCCGcGggCCGCa -3'
miRNA:   3'- cGGGCUag--CACCAGU-------------AGGU-CaaGGCG- -5'
10730 3' -54.2 NC_002794.1 + 105491 0.66 0.974851
Target:  5'- cUCCGGUCGUGGagccgccgCcgCCGGUcgcgCCGUc -3'
miRNA:   3'- cGGGCUAGCACCa-------GuaGGUCAa---GGCG- -5'
10730 3' -54.2 NC_002794.1 + 181505 0.68 0.952241
Target:  5'- aGCCCGAcgcUCGUccacGUCGUCC-GUUcgcCCGCc -3'
miRNA:   3'- -CGGGCU---AGCAc---CAGUAGGuCAA---GGCG- -5'
10730 3' -54.2 NC_002794.1 + 124382 0.68 0.952637
Target:  5'- cGCCuCGGUCGcggcggcgcgucgccGGUCGUCgGGgcgccgUCCGCc -3'
miRNA:   3'- -CGG-GCUAGCa--------------CCAGUAGgUCa-----AGGCG- -5'
10730 3' -54.2 NC_002794.1 + 49041 0.67 0.956101
Target:  5'- gGCgCGGUCGUcagCGUCCAGggCgCGCa -3'
miRNA:   3'- -CGgGCUAGCAccaGUAGGUCaaG-GCG- -5'
10730 3' -54.2 NC_002794.1 + 153365 0.67 0.959743
Target:  5'- gGCCCGGcugcgcgcccUCGUGGUCgAUCUg--UCCGa -3'
miRNA:   3'- -CGGGCU----------AGCACCAG-UAGGucaAGGCg -5'
10730 3' -54.2 NC_002794.1 + 48335 0.67 0.963172
Target:  5'- gGCCCGGUacucccgGUGGUacgCCuGcUCCGCg -3'
miRNA:   3'- -CGGGCUAg------CACCAguaGGuCaAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 113652 0.67 0.959743
Target:  5'- gGCCCGG-CGUccucGG-CGUCCAGcgCgGCg -3'
miRNA:   3'- -CGGGCUaGCA----CCaGUAGGUCaaGgCG- -5'
10730 3' -54.2 NC_002794.1 + 37139 0.67 0.963172
Target:  5'- cGCCgGGUCGaGGgcgCAgcUCCAGUcgcUCCGg -3'
miRNA:   3'- -CGGgCUAGCaCCa--GU--AGGUCA---AGGCg -5'
10730 3' -54.2 NC_002794.1 + 60886 0.67 0.963172
Target:  5'- -aUCGGcgcCGUGGUCcccAUCCcGUUCCGCc -3'
miRNA:   3'- cgGGCUa--GCACCAG---UAGGuCAAGGCG- -5'
10730 3' -54.2 NC_002794.1 + 111998 0.67 0.966392
Target:  5'- cGCCCug-CGcGGUCA-CCAGUcggcgCCGCc -3'
miRNA:   3'- -CGGGcuaGCaCCAGUaGGUCAa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 150832 0.67 0.963172
Target:  5'- -gCUGAUCGUcGUCAgcUCCAGcggcggCCGCg -3'
miRNA:   3'- cgGGCUAGCAcCAGU--AGGUCaa----GGCG- -5'
10730 3' -54.2 NC_002794.1 + 107336 0.67 0.966392
Target:  5'- gGCuUCGGUcCGUGG--GUCCGGUcgCCGCg -3'
miRNA:   3'- -CG-GGCUA-GCACCagUAGGUCAa-GGCG- -5'
10730 3' -54.2 NC_002794.1 + 148217 0.66 0.983566
Target:  5'- cGCUCGAUC--GGUC-UCCGGU-CgGCg -3'
miRNA:   3'- -CGGGCUAGcaCCAGuAGGUCAaGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.