miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 64815 0.65 0.964157
Target:  5'- -cGCGGAcggcggcgagccgGCGCCGAcgaccggacggCGCGGCgGCa -3'
miRNA:   3'- gaCGUCU-------------UGCGGCUcaa--------GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 144886 0.66 0.962507
Target:  5'- gUGCGGGGCGagaCGc--UCGCG-CCGCu -3'
miRNA:   3'- gACGUCUUGCg--GCucaAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 137646 0.66 0.962507
Target:  5'- -gGCGG-GCGCCGGGccUCcgGCG-CCGCu -3'
miRNA:   3'- gaCGUCuUGCGGCUCa-AG--CGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 180300 0.66 0.962507
Target:  5'- -cGCAacACGCCGGccggCGCGACCa- -3'
miRNA:   3'- gaCGUcuUGCGGCUcaa-GCGCUGGcg -5'
10730 5' -55.5 NC_002794.1 + 54999 0.66 0.962507
Target:  5'- -gGCGGcgacuCGCCGGGcgucCGCcGCCGCg -3'
miRNA:   3'- gaCGUCuu---GCGGCUCaa--GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 182938 0.66 0.962507
Target:  5'- -aGUAGuccgGCGCCGGGcUCGagcCGACgGCg -3'
miRNA:   3'- gaCGUCu---UGCGGCUCaAGC---GCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 116493 0.66 0.962507
Target:  5'- -cGCAGAaagucguagAUGCCGAGgcaggCGUaGCCGUc -3'
miRNA:   3'- gaCGUCU---------UGCGGCUCaa---GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 143162 0.66 0.962507
Target:  5'- -cGCGGugaAGCGCCaGAGcUUGCGGCgGUu -3'
miRNA:   3'- gaCGUC---UUGCGG-CUCaAGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 141081 0.66 0.962507
Target:  5'- -cGCGGAGauCGUCGAGcaacuggCGCGACgGUc -3'
miRNA:   3'- gaCGUCUU--GCGGCUCaa-----GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 139429 0.66 0.961491
Target:  5'- aUGCAGGucucguguccgcgcGCGCCGAucGgcaggUCGuCGugCGCc -3'
miRNA:   3'- gACGUCU--------------UGCGGCU--Ca----AGC-GCugGCG- -5'
10730 5' -55.5 NC_002794.1 + 33147 0.66 0.959049
Target:  5'- gCUGCGGGAC-CCGAc--CGUGuuCCGCa -3'
miRNA:   3'- -GACGUCUUGcGGCUcaaGCGCu-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 55165 0.66 0.959049
Target:  5'- -aGUcGAGCGCCGAGcggGCGACUcgagGCg -3'
miRNA:   3'- gaCGuCUUGCGGCUCaagCGCUGG----CG- -5'
10730 5' -55.5 NC_002794.1 + 14589 0.66 0.959049
Target:  5'- -aGCGGGccguggcgagcGCGCCGGGcacCGCGACgGg -3'
miRNA:   3'- gaCGUCU-----------UGCGGCUCaa-GCGCUGgCg -5'
10730 5' -55.5 NC_002794.1 + 127598 0.66 0.959049
Target:  5'- uCUGCGcGGcCGCUGAGcggCGCgGACCGg -3'
miRNA:   3'- -GACGU-CUuGCGGCUCaa-GCG-CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 16928 0.66 0.959049
Target:  5'- aCUGUcGucgGCGCCGAGc-CGCcACCGCc -3'
miRNA:   3'- -GACGuCu--UGCGGCUCaaGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 12312 0.66 0.959049
Target:  5'- -cGCGGGACuccuCCGcGGUccgCGUGACCGUg -3'
miRNA:   3'- gaCGUCUUGc---GGC-UCAa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 70568 0.66 0.959049
Target:  5'- gCUcCAGAucgcucUGCCGAG-UCGCcGACUGCg -3'
miRNA:   3'- -GAcGUCUu-----GCGGCUCaAGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 180876 0.66 0.959049
Target:  5'- -gGCGGAuccggcGCGCCcGG-UCuCGGCCGCg -3'
miRNA:   3'- gaCGUCU------UGCGGcUCaAGcGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 187902 0.66 0.958331
Target:  5'- -cGCGGugccgcucgccCGCCGGGccccgcCGCGACCGUc -3'
miRNA:   3'- gaCGUCuu---------GCGGCUCaa----GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 300 0.66 0.95797
Target:  5'- -cGCcGAACGCCGGGcccgccccacccccaCGCGcgcGCCGCc -3'
miRNA:   3'- gaCGuCUUGCGGCUCaa-------------GCGC---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.