miRNA display CGI


Results 41 - 60 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 143162 0.66 0.962507
Target:  5'- -cGCGGugaAGCGCCaGAGcUUGCGGCgGUu -3'
miRNA:   3'- gaCGUC---UUGCGG-CUCaAGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 141081 0.66 0.962507
Target:  5'- -cGCGGAGauCGUCGAGcaacuggCGCGACgGUc -3'
miRNA:   3'- gaCGUCUU--GCGGCUCaa-----GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 144886 0.66 0.962507
Target:  5'- gUGCGGGGCGagaCGc--UCGCG-CCGCu -3'
miRNA:   3'- gACGUCUUGCg--GCucaAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 16928 0.66 0.959049
Target:  5'- aCUGUcGucgGCGCCGAGc-CGCcACCGCc -3'
miRNA:   3'- -GACGuCu--UGCGGCUCaaGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 127598 0.66 0.959049
Target:  5'- uCUGCGcGGcCGCUGAGcggCGCgGACCGg -3'
miRNA:   3'- -GACGU-CUuGCGGCUCaa-GCG-CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 14589 0.66 0.959049
Target:  5'- -aGCGGGccguggcgagcGCGCCGGGcacCGCGACgGg -3'
miRNA:   3'- gaCGUCU-----------UGCGGCUCaa-GCGCUGgCg -5'
10730 5' -55.5 NC_002794.1 + 184043 0.66 0.955377
Target:  5'- -cGCAGcGCGCgG---UCGCGgGCCGCg -3'
miRNA:   3'- gaCGUCuUGCGgCucaAGCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 150213 0.66 0.955377
Target:  5'- -aGCGGcuGCuGCCGAGcugcgUGCGACgGCa -3'
miRNA:   3'- gaCGUCu-UG-CGGCUCaa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 120101 0.66 0.955377
Target:  5'- gUGCcGAgcGCGCCGcgcGUgacgcgCGCGACgGCg -3'
miRNA:   3'- gACGuCU--UGCGGCu--CAa-----GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 112736 0.66 0.955377
Target:  5'- -cGCGGAAgGCgCG-GUgcucCGCGGCgGCg -3'
miRNA:   3'- gaCGUCUUgCG-GCuCAa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 190988 0.66 0.955377
Target:  5'- -gGCAGcGCGgCGAcGgcgUCGCGAUCGg -3'
miRNA:   3'- gaCGUCuUGCgGCU-Ca--AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 183498 0.66 0.955377
Target:  5'- -cGCGcGAACccggccCCGAGacccaugUCGCGGCCGUg -3'
miRNA:   3'- gaCGU-CUUGc-----GGCUCa------AGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 126596 0.66 0.957606
Target:  5'- -gGaCuGAGCGCCGAGgccggcgccgacgUCGCGGCgugaGCg -3'
miRNA:   3'- gaC-GuCUUGCGGCUCa------------AGCGCUGg---CG- -5'
10730 5' -55.5 NC_002794.1 + 187902 0.66 0.958331
Target:  5'- -cGCGGugccgcucgccCGCCGGGccccgcCGCGACCGUc -3'
miRNA:   3'- gaCGUCuu---------GCGGCUCaa----GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 300 0.66 0.95797
Target:  5'- -cGCcGAACGCCGGGcccgccccacccccaCGCGcgcGCCGCc -3'
miRNA:   3'- gaCGuCUUGCGGCUCaa-------------GCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 116730 0.66 0.95797
Target:  5'- gUGCcGAGCguguuggcgacgccGCCGAGgaagGCGGCUGCa -3'
miRNA:   3'- gACGuCUUG--------------CGGCUCaag-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 33147 0.66 0.959049
Target:  5'- gCUGCGGGAC-CCGAc--CGUGuuCCGCa -3'
miRNA:   3'- -GACGUCUUGcGGCUcaaGCGCu-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 55165 0.66 0.959049
Target:  5'- -aGUcGAGCGCCGAGcggGCGACUcgagGCg -3'
miRNA:   3'- gaCGuCUUGCGGCUCaagCGCUGG----CG- -5'
10730 5' -55.5 NC_002794.1 + 185935 0.67 0.943048
Target:  5'- -gGCcaccCGCCaGGcUCGCGGCCGCg -3'
miRNA:   3'- gaCGucuuGCGGcUCaAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 153691 0.67 0.943048
Target:  5'- -cGCGcGAccgGCGaCCG-GUUUaGCGACCGCg -3'
miRNA:   3'- gaCGU-CU---UGC-GGCuCAAG-CGCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.