miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 182259 0.67 0.938489
Target:  5'- -cGaCAGcGCGCCGAGUcccgaGCGGCCu- -3'
miRNA:   3'- gaC-GUCuUGCGGCUCAag---CGCUGGcg -5'
10730 5' -55.5 NC_002794.1 + 82705 0.67 0.938489
Target:  5'- -cGCcGAgacGCGCCGAGgacgcCGCGccaccacucGCCGCg -3'
miRNA:   3'- gaCGuCU---UGCGGCUCaa---GCGC---------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 48890 0.67 0.938489
Target:  5'- -gGCAGGccagcguUGCCGcAGcUCGgGGCCGCu -3'
miRNA:   3'- gaCGUCUu------GCGGC-UCaAGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 99425 0.67 0.938489
Target:  5'- -aGCAGggU-CCGGGUUUGUugGACCGg -3'
miRNA:   3'- gaCGUCuuGcGGCUCAAGCG--CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 26086 0.67 0.933704
Target:  5'- -cGCGGGgcaGCGCCGAcGgccccgGCGAUCGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCU-Caag---CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 90480 0.67 0.938489
Target:  5'- -gGCGGGGcCGCCGucccgCGCGAUCGg -3'
miRNA:   3'- gaCGUCUU-GCGGCucaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 192382 0.67 0.935645
Target:  5'- -cGCGGGcugaccgccaccgccGCGCCGGGguagUCGaaacGCCGCg -3'
miRNA:   3'- gaCGUCU---------------UGCGGCUCa---AGCgc--UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194911 0.67 0.933704
Target:  5'- gUGCu---CGCCGAcagcaGCGGCCGCa -3'
miRNA:   3'- gACGucuuGCGGCUcaag-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 75200 0.67 0.943048
Target:  5'- -aGCAGAGa-CCGAG-UCGCGACaUGUc -3'
miRNA:   3'- gaCGUCUUgcGGCUCaAGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 54383 0.67 0.943048
Target:  5'- cCUGCAGAcccGCGUCGAcgcccgccUCGCGGagcUCGCa -3'
miRNA:   3'- -GACGUCU---UGCGGCUca------AGCGCU---GGCG- -5'
10730 5' -55.5 NC_002794.1 + 185935 0.67 0.943048
Target:  5'- -gGCcaccCGCCaGGcUCGCGGCCGCg -3'
miRNA:   3'- gaCGucuuGCGGcUCaAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 153691 0.67 0.943048
Target:  5'- -cGCGcGAccgGCGaCCG-GUUUaGCGACCGCg -3'
miRNA:   3'- gaCGU-CU---UGC-GGCuCAAG-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 146508 0.67 0.943048
Target:  5'- -cGCGGAGC-CCcuGcUCGgGACCGCg -3'
miRNA:   3'- gaCGUCUUGcGGcuCaAGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 139996 0.67 0.943048
Target:  5'- -cGCGGGACGgugCGGGUggaggcCGCGgagGCCGCg -3'
miRNA:   3'- gaCGUCUUGCg--GCUCAa-----GCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 89977 0.67 0.943048
Target:  5'- -cGUGGuGCGCCGGcGUUCGaccgGugCGCa -3'
miRNA:   3'- gaCGUCuUGCGGCU-CAAGCg---CugGCG- -5'
10730 5' -55.5 NC_002794.1 + 101571 0.67 0.943048
Target:  5'- -gGCGGGAgUGCCGGccgcCGCGGCCGg -3'
miRNA:   3'- gaCGUCUU-GCGGCUcaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 22605 0.67 0.943048
Target:  5'- -gGuCGGGACGCuCGAGccgaUCG-GGCCGCu -3'
miRNA:   3'- gaC-GUCUUGCG-GCUCa---AGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 133149 0.67 0.943048
Target:  5'- gUGCgAGAucuGCGCCGAcgaCGUGACuCGCu -3'
miRNA:   3'- gACG-UCU---UGCGGCUcaaGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 131194 0.67 0.943048
Target:  5'- -aGCAcGGCGCCGGGgcggCGCcgguguacauGACCGUc -3'
miRNA:   3'- gaCGUcUUGCGGCUCaa--GCG----------CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 34233 0.67 0.933704
Target:  5'- gUGCAGGA-GCUGcacgCGCGGCUGCc -3'
miRNA:   3'- gACGUCUUgCGGCucaaGCGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.