miRNA display CGI


Results 101 - 120 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 90480 0.67 0.938489
Target:  5'- -gGCGGGGcCGCCGucccgCGCGAUCGg -3'
miRNA:   3'- gaCGUCUU-GCGGCucaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 26086 0.67 0.933704
Target:  5'- -cGCGGGgcaGCGCCGAcGgccccgGCGAUCGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCU-Caag---CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 99425 0.67 0.938489
Target:  5'- -aGCAGggU-CCGGGUUUGUugGACCGg -3'
miRNA:   3'- gaCGUCuuGcGGCUCAAGCG--CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 48890 0.67 0.938489
Target:  5'- -gGCAGGccagcguUGCCGcAGcUCGgGGCCGCu -3'
miRNA:   3'- gaCGUCUu------GCGGC-UCaAGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 82705 0.67 0.938489
Target:  5'- -cGCcGAgacGCGCCGAGgacgcCGCGccaccacucGCCGCg -3'
miRNA:   3'- gaCGuCU---UGCGGCUCaa---GCGC---------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 182259 0.67 0.938489
Target:  5'- -cGaCAGcGCGCCGAGUcccgaGCGGCCu- -3'
miRNA:   3'- gaC-GUCuUGCGGCUCAag---CGCUGGcg -5'
10730 5' -55.5 NC_002794.1 + 117194 0.67 0.938489
Target:  5'- -cGCAGAucgGCGUCGGGcccgggCGgcucCGGCCGCg -3'
miRNA:   3'- gaCGUCU---UGCGGCUCaa----GC----GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 38440 0.68 0.906345
Target:  5'- -gGCGGGcCGgaCUGAGgagccggCGCGGCCGCg -3'
miRNA:   3'- gaCGUCUuGC--GGCUCaa-----GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 48037 0.68 0.906345
Target:  5'- -cGCcGGACGCCGAGUgCGUG-CUGg -3'
miRNA:   3'- gaCGuCUUGCGGCUCAaGCGCuGGCg -5'
10730 5' -55.5 NC_002794.1 + 16245 0.68 0.906345
Target:  5'- -gGCAcGucccCGCCGAGUacucguucgaUCGCG-CCGCg -3'
miRNA:   3'- gaCGU-Cuu--GCGGCUCA----------AGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 13050 0.68 0.906345
Target:  5'- uCUGCGGAACcCCacuauuugagGGGgccgCGCGACCGg -3'
miRNA:   3'- -GACGUCUUGcGG----------CUCaa--GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 103909 0.68 0.90268
Target:  5'- -gGCgAGAACGCCGcgcaacgcggcgagcAGcgcgCGUGGCCGCc -3'
miRNA:   3'- gaCG-UCUUGCGGC---------------UCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 80619 0.68 0.906345
Target:  5'- uCUGCcu-GCcgGCCGAGcaccUCGCGACCGg -3'
miRNA:   3'- -GACGucuUG--CGGCUCa---AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 101430 0.68 0.906345
Target:  5'- gCUGCgcgacgauccgGGGACGCCGg---CGCGcCCGCc -3'
miRNA:   3'- -GACG-----------UCUUGCGGCucaaGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 95491 0.68 0.911105
Target:  5'- uUGCGGAACgagcucgGCC-AGUaucucuaUgGCGACCGCg -3'
miRNA:   3'- gACGUCUUG-------CGGcUCA-------AgCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 52836 0.68 0.91169
Target:  5'- -cGUAGAG-GCCGGucagcacGUUCGCcacGGCCGCg -3'
miRNA:   3'- gaCGUCUUgCGGCU-------CAAGCG---CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 8625 0.68 0.912273
Target:  5'- gUGCGGAGCGCgGuGgaaGaCGugCGCg -3'
miRNA:   3'- gACGUCUUGCGgCuCaagC-GCugGCG- -5'
10730 5' -55.5 NC_002794.1 + 86766 0.68 0.912273
Target:  5'- -gGUGGAuCGCCGGGaaCGaacCGGCCGCu -3'
miRNA:   3'- gaCGUCUuGCGGCUCaaGC---GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 112822 0.68 0.912853
Target:  5'- uCUGCucGGcCGCCGAGUacggcugcucgucggCGCG-CCGCa -3'
miRNA:   3'- -GACGu-CUuGCGGCUCAa--------------GCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 149649 0.68 0.903911
Target:  5'- aUGCGGuuCGCCGAGgaggccgagcgggggCGCGucgcgcucgacugGCCGCg -3'
miRNA:   3'- gACGUCuuGCGGCUCaa-------------GCGC-------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.