miRNA display CGI


Results 21 - 40 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 36566 0.72 0.698399
Target:  5'- gCUGCAGAcacgcgcCGCCGAGcagGCGGuCCGCg -3'
miRNA:   3'- -GACGUCUu------GCGGCUCaagCGCU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 22903 0.72 0.737267
Target:  5'- uUGguGGACGgCGGcGacCGCGGCCGCc -3'
miRNA:   3'- gACguCUUGCgGCU-CaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 29756 0.71 0.783814
Target:  5'- -cGCcGAgcccGCGCCGAGcgUCuCGGCCGCu -3'
miRNA:   3'- gaCGuCU----UGCGGCUCa-AGcGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194113 0.71 0.765527
Target:  5'- gCUGCGGcACcgcgcgcacgGCUGAGgcaGCGGCCGCa -3'
miRNA:   3'- -GACGUCuUG----------CGGCUCaagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 102156 0.71 0.765527
Target:  5'- -gGCGGcgugcGCGCCGGGgccaUCGUGGCgCGCg -3'
miRNA:   3'- gaCGUCu----UGCGGCUCa---AGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 145854 0.71 0.774731
Target:  5'- -cGCucgacGAGcCGCCGAGggcCGCGACCGg -3'
miRNA:   3'- gaCGu----CUU-GCGGCUCaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 137593 0.71 0.774731
Target:  5'- gUGCGGGGagccgcCGCCGGcggUCGCGGCgGCg -3'
miRNA:   3'- gACGUCUU------GCGGCUca-AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 93027 0.71 0.756209
Target:  5'- -gGCGGAAC-CCG-GUgCGCGGCUGCc -3'
miRNA:   3'- gaCGUCUUGcGGCuCAaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 11532 0.71 0.746786
Target:  5'- gCUGCGGG-CGaCCGAGgacCGCGGCUGg -3'
miRNA:   3'- -GACGUCUuGC-GGCUCaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 148136 0.7 0.818755
Target:  5'- -cGCGGGGcCGCCGGGgcgagggcggUCGCGACgGa -3'
miRNA:   3'- gaCGUCUU-GCGGCUCa---------AGCGCUGgCg -5'
10730 5' -55.5 NC_002794.1 + 97865 0.7 0.810244
Target:  5'- -cGCGGAuugACGgCGAcGUUCGUcACCGCg -3'
miRNA:   3'- gaCGUCU---UGCgGCU-CAAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 106264 0.7 0.827103
Target:  5'- -gGC-GAGCGCCGcGcgUCGCG-CCGCc -3'
miRNA:   3'- gaCGuCUUGCGGCuCa-AGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 48627 0.7 0.835282
Target:  5'- -cGCGGAGCgGCCGucgGGgccCGCGAgCCGCc -3'
miRNA:   3'- gaCGUCUUG-CGGC---UCaa-GCGCU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 107536 0.7 0.827103
Target:  5'- -gGCGcGGCGCCGGcggCGaCGACCGCg -3'
miRNA:   3'- gaCGUcUUGCGGCUcaaGC-GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 111620 0.7 0.822114
Target:  5'- -gGCGGGGCcGCCGcggccgccgccggucGGgcgcCGCGGCCGCg -3'
miRNA:   3'- gaCGUCUUG-CGGC---------------UCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 72005 0.7 0.827103
Target:  5'- -cGcCGGAGCucgaggaaGCCGAGgUCGCGcaGCCGCu -3'
miRNA:   3'- gaC-GUCUUG--------CGGCUCaAGCGC--UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 19520 0.7 0.827103
Target:  5'- -cGCucGGAGCGCCGGcgcggCGCGGCCcGCc -3'
miRNA:   3'- gaCG--UCUUGCGGCUcaa--GCGCUGG-CG- -5'
10730 5' -55.5 NC_002794.1 + 139246 0.7 0.810244
Target:  5'- -aGCAGGAUGCagaugaacaUGAGcgUGCGACUGCg -3'
miRNA:   3'- gaCGUCUUGCG---------GCUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 72146 0.7 0.810244
Target:  5'- -aGCGGua-GCCGAGUaCGCGcACaCGCg -3'
miRNA:   3'- gaCGUCuugCGGCUCAaGCGC-UG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 37757 0.7 0.810244
Target:  5'- -cGCGGcGGCGCCGGcGggaGCGGCCGUc -3'
miRNA:   3'- gaCGUC-UUGCGGCU-CaagCGCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.