miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 141634 0.7 0.792765
Target:  5'- -aGCgacgGGAAgGCCGGcGUggcCGCGGCCGCc -3'
miRNA:   3'- gaCG----UCUUgCGGCU-CAa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 181588 0.7 0.801578
Target:  5'- gCUGCGGGccGCGaCCGGG-UCGCcccguuGCCGCa -3'
miRNA:   3'- -GACGUCU--UGC-GGCUCaAGCGc-----UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 72146 0.7 0.810244
Target:  5'- -aGCGGua-GCCGAGUaCGCGcACaCGCg -3'
miRNA:   3'- gaCGUCuugCGGCUCAaGCGC-UG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 19520 0.7 0.827103
Target:  5'- -cGCucGGAGCGCCGGcgcggCGCGGCCcGCc -3'
miRNA:   3'- gaCG--UCUUGCGGCUcaa--GCGCUGG-CG- -5'
10730 5' -55.5 NC_002794.1 + 62686 0.7 0.835282
Target:  5'- cCUGCGGGugcaGCUGuGUcgGCGGCCGCc -3'
miRNA:   3'- -GACGUCUug--CGGCuCAagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 62098 0.7 0.818755
Target:  5'- -cGCGGcGCGCCGGacggucuggugcGUgucgaGCGACCGCc -3'
miRNA:   3'- gaCGUCuUGCGGCU------------CAag---CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 106229 0.7 0.792765
Target:  5'- -cGCGGccGCGCuCGGG-UCGCaGACCGCc -3'
miRNA:   3'- gaCGUCu-UGCG-GCUCaAGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 111620 0.7 0.822114
Target:  5'- -gGCGGGGCcGCCGcggccgccgccggucGGgcgcCGCGGCCGCg -3'
miRNA:   3'- gaCGUCUUG-CGGC---------------UCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 117628 0.7 0.792765
Target:  5'- -cGaCAGGGCGCCGAccgCGCGGCCcCg -3'
miRNA:   3'- gaC-GUCUUGCGGCUcaaGCGCUGGcG- -5'
10730 5' -55.5 NC_002794.1 + 148136 0.7 0.818755
Target:  5'- -cGCGGGGcCGCCGGGgcgagggcggUCGCGACgGa -3'
miRNA:   3'- gaCGUCUU-GCGGCUCa---------AGCGCUGgCg -5'
10730 5' -55.5 NC_002794.1 + 111836 0.7 0.792765
Target:  5'- -cGCGGAACGucugcCCGAGagccgUCGCcACCGCc -3'
miRNA:   3'- gaCGUCUUGC-----GGCUCa----AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 90375 0.7 0.801578
Target:  5'- gUGCAGG--GCCGGGUcUCGCcGuCCGCg -3'
miRNA:   3'- gACGUCUugCGGCUCA-AGCG-CuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 38498 0.7 0.801578
Target:  5'- -cGCGGcGGCGCCGG--UCGCcGCCGCc -3'
miRNA:   3'- gaCGUC-UUGCGGCUcaAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 58841 0.7 0.818755
Target:  5'- -cGCgAGGACGCCGAcGUgcagcucgUCGCcGACCGg -3'
miRNA:   3'- gaCG-UCUUGCGGCU-CA--------AGCG-CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 134200 0.7 0.801578
Target:  5'- gCUGguGGGgGCCGucGGUcgccaaGCGACCGCc -3'
miRNA:   3'- -GACguCUUgCGGC--UCAag----CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 72005 0.7 0.827103
Target:  5'- -cGcCGGAGCucgaggaaGCCGAGgUCGCGcaGCCGCu -3'
miRNA:   3'- gaC-GUCUUG--------CGGCUCaAGCGC--UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 69405 0.7 0.792765
Target:  5'- -aGCGGccaGGCGCCGAGc-CGCGACagGCa -3'
miRNA:   3'- gaCGUC---UUGCGGCUCaaGCGCUGg-CG- -5'
10730 5' -55.5 NC_002794.1 + 8738 0.7 0.835282
Target:  5'- -cGUGGAGCGCgugucuCGGGcgugUCGCGACgGCg -3'
miRNA:   3'- gaCGUCUUGCG------GCUCa---AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 118272 0.69 0.843283
Target:  5'- -gGCGGcGGCGCCGGcgUCGgGgACCGCg -3'
miRNA:   3'- gaCGUC-UUGCGGCUcaAGCgC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 90946 0.69 0.843283
Target:  5'- -gGCGGGcuguGCGCCGAGgccCGgGcCCGCu -3'
miRNA:   3'- gaCGUCU----UGCGGCUCaa-GCgCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.