Results 81 - 100 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10730 | 5' | -55.5 | NC_002794.1 | + | 59121 | 0.68 | 0.887222 |
Target: 5'- -cGCGGccaccGAgGCCGAcUUCGCGcaggGCCGCg -3' miRNA: 3'- gaCGUC-----UUgCGGCUcAAGCGC----UGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 184948 | 0.68 | 0.900192 |
Target: 5'- -cGCAGcuGCGCCGGcccgCGCaGCCGCu -3' miRNA: 3'- gaCGUCu-UGCGGCUcaa-GCGcUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 149649 | 0.68 | 0.903911 |
Target: 5'- aUGCGGuuCGCCGAGgaggccgagcgggggCGCGucgcgcucgacugGCCGCg -3' miRNA: 3'- gACGUCuuGCGGCUCaa-------------GCGC-------------UGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 16245 | 0.68 | 0.906345 |
Target: 5'- -gGCAcGucccCGCCGAGUacucguucgaUCGCG-CCGCg -3' miRNA: 3'- gaCGU-Cuu--GCGGCUCA----------AGCGCuGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 13050 | 0.68 | 0.906345 |
Target: 5'- uCUGCGGAACcCCacuauuugagGGGgccgCGCGACCGg -3' miRNA: 3'- -GACGUCUUGcGG----------CUCaa--GCGCUGGCg -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 93721 | 0.68 | 0.887222 |
Target: 5'- cCUGCuGuuGCGCCGc--UCGCG-CCGCg -3' miRNA: 3'- -GACGuCu-UGCGGCucaAGCGCuGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 103909 | 0.68 | 0.90268 |
Target: 5'- -gGCgAGAACGCCGcgcaacgcggcgagcAGcgcgCGUGGCCGCc -3' miRNA: 3'- gaCG-UCUUGCGGC---------------UCaa--GCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 93831 | 0.68 | 0.900192 |
Target: 5'- -gGCGGccauCGCCGAGaUCauggaCGGCCGCg -3' miRNA: 3'- gaCGUCuu--GCGGCUCaAGc----GCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 70050 | 0.68 | 0.893817 |
Target: 5'- -cGUAGGuCGCCcGGUcggGCGGCCGCa -3' miRNA: 3'- gaCGUCUuGCGGcUCAag-CGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 184579 | 0.68 | 0.893817 |
Target: 5'- -cGCGGcGGCGgCGGccacgCGCGGCCGCg -3' miRNA: 3'- gaCGUC-UUGCgGCUcaa--GCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 18274 | 0.68 | 0.893817 |
Target: 5'- aUGCGcGGCGCCGAGccUUCGaacCGAgCCGCc -3' miRNA: 3'- gACGUcUUGCGGCUC--AAGC---GCU-GGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 185460 | 0.68 | 0.893817 |
Target: 5'- -cGCGacaAACGCCGcGggCgGCGGCCGCg -3' miRNA: 3'- gaCGUc--UUGCGGCuCaaG-CGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 80410 | 0.68 | 0.899564 |
Target: 5'- -cGCGGcccagguGGCGCCGGG--CGgGGCCGCc -3' miRNA: 3'- gaCGUC-------UUGCGGCUCaaGCgCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 169457 | 0.68 | 0.900192 |
Target: 5'- gUGCA--ACGgUGGGUUCgggGCGACCGUg -3' miRNA: 3'- gACGUcuUGCgGCUCAAG---CGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 95761 | 0.68 | 0.900192 |
Target: 5'- -cGCGGGGCGgCGGc--CGCGACgGCg -3' miRNA: 3'- gaCGUCUUGCgGCUcaaGCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 189901 | 0.68 | 0.900192 |
Target: 5'- -cGCcgucAGCGCCGccg-CGCGACCGCc -3' miRNA: 3'- gaCGuc--UUGCGGCucaaGCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 48037 | 0.68 | 0.906345 |
Target: 5'- -cGCcGGACGCCGAGUgCGUG-CUGg -3' miRNA: 3'- gaCGuCUUGCGGCUCAaGCGCuGGCg -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 21708 | 0.68 | 0.900192 |
Target: 5'- -gGCGuccacGGGCGCUGcg-UCGCGAUCGCg -3' miRNA: 3'- gaCGU-----CUUGCGGCucaAGCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 106359 | 0.68 | 0.887222 |
Target: 5'- -gGCGGGcggGCGCCG-GUUCGCgcggagggcaGACgGCg -3' miRNA: 3'- gaCGUCU---UGCGGCuCAAGCG----------CUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 36270 | 0.68 | 0.887222 |
Target: 5'- gUGUA--ACGCCGcGUccCGCGACUGCg -3' miRNA: 3'- gACGUcuUGCGGCuCAa-GCGCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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