miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 152034 1.12 0.00291
Target:  5'- uCUGCAGAACGCCGAGUUCGCGACCGCg -3'
miRNA:   3'- -GACGUCUUGCGGCUCAAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 122903 0.89 0.095641
Target:  5'- -cGCAcGGGCGCCGAGUUCGCGACgGUg -3'
miRNA:   3'- gaCGU-CUUGCGGCUCAAGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 100774 0.82 0.252341
Target:  5'- -cGCGGAguacacGCGCCugcGGUUCGCGGCCGCu -3'
miRNA:   3'- gaCGUCU------UGCGGc--UCAAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 126375 0.81 0.276952
Target:  5'- gCUGCGuGGGCGCCGGGgccugCGCGGCgGCg -3'
miRNA:   3'- -GACGU-CUUGCGGCUCaa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 121398 0.8 0.310363
Target:  5'- -cGCGGccGGCGCCGGGacCGCGACCGUc -3'
miRNA:   3'- gaCGUC--UUGCGGCUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 1 0.78 0.402641
Target:  5'- ----cGAGCGCCGAGa-CGCGGCCGCg -3'
miRNA:   3'- gacguCUUGCGGCUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 138392 0.77 0.437036
Target:  5'- gCUGcCAGAagGCGUCGAGgucgUCGCcGGCCGCc -3'
miRNA:   3'- -GAC-GUCU--UGCGGCUCa---AGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 180661 0.77 0.463912
Target:  5'- -cGCAGGGCguGCCGGGgaacUCGcCGGCCGCu -3'
miRNA:   3'- gaCGUCUUG--CGGCUCa---AGC-GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 14472 0.76 0.501034
Target:  5'- -aGCGGcGCGCCGcgcucgcuGUUCGCGGCgGCg -3'
miRNA:   3'- gaCGUCuUGCGGCu-------CAAGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 36895 0.75 0.55602
Target:  5'- gUGCAGAGCGuCCaGAGgUCGCggcgccggccccgcGACCGCg -3'
miRNA:   3'- gACGUCUUGC-GG-CUCaAGCG--------------CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 100679 0.75 0.568825
Target:  5'- -cGCuacGCGcCCGAGUUCGUGACCGg -3'
miRNA:   3'- gaCGucuUGC-GGCUCAAGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 47735 0.74 0.608617
Target:  5'- -aGCAGccCGCCGGGUccacgUgGCGGCCGUg -3'
miRNA:   3'- gaCGUCuuGCGGCUCA-----AgCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 18498 0.73 0.658676
Target:  5'- -aGCAGuaGAgGCCGcGaaCGCGACCGCg -3'
miRNA:   3'- gaCGUC--UUgCGGCuCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 43251 0.73 0.658676
Target:  5'- -gGcCGGAACGCCGGGUgguagcacUCGCaGAuCCGCu -3'
miRNA:   3'- gaC-GUCUUGCGGCUCA--------AGCG-CU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 176909 0.73 0.678611
Target:  5'- -gGUGGGAuUGCCGGGUgugguugguucaUCGUGGCCGCu -3'
miRNA:   3'- gaCGUCUU-GCGGCUCA------------AGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 36566 0.72 0.698399
Target:  5'- gCUGCAGAcacgcgcCGCCGAGcagGCGGuCCGCg -3'
miRNA:   3'- -GACGUCUu------GCGGCUCaagCGCU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 144430 0.72 0.708217
Target:  5'- cCUGCu--GCGCCGAGUgcaGCcGugCGCg -3'
miRNA:   3'- -GACGucuUGCGGCUCAag-CG-CugGCG- -5'
10730 5' -55.5 NC_002794.1 + 82846 0.72 0.717973
Target:  5'- -aGCGcGAGCG-CGAG--CGCGACCGCg -3'
miRNA:   3'- gaCGU-CUUGCgGCUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 142939 0.72 0.717973
Target:  5'- -aGCAGGugGCCGAGgggaaGuCGGCgGCg -3'
miRNA:   3'- gaCGUCUugCGGCUCaag--C-GCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 99580 0.72 0.727659
Target:  5'- -aGgGGggUGCgGAGggCGCGGCgGCg -3'
miRNA:   3'- gaCgUCuuGCGgCUCaaGCGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.