miRNA display CGI


Results 21 - 40 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 58421 0.72 0.737267
Target:  5'- gUGCGGccgccgccaGACGCCGAGgccacgcugCGCcuGGCCGCg -3'
miRNA:   3'- gACGUC---------UUGCGGCUCaa-------GCG--CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 22903 0.72 0.737267
Target:  5'- uUGguGGACGgCGGcGacCGCGGCCGCc -3'
miRNA:   3'- gACguCUUGCgGCU-CaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 11532 0.71 0.746786
Target:  5'- gCUGCGGG-CGaCCGAGgacCGCGGCUGg -3'
miRNA:   3'- -GACGUCUuGC-GGCUCaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 93027 0.71 0.756209
Target:  5'- -gGCGGAAC-CCG-GUgCGCGGCUGCc -3'
miRNA:   3'- gaCGUCUUGcGGCuCAaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194113 0.71 0.765527
Target:  5'- gCUGCGGcACcgcgcgcacgGCUGAGgcaGCGGCCGCa -3'
miRNA:   3'- -GACGUCuUG----------CGGCUCaagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 102156 0.71 0.765527
Target:  5'- -gGCGGcgugcGCGCCGGGgccaUCGUGGCgCGCg -3'
miRNA:   3'- gaCGUCu----UGCGGCUCa---AGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 145854 0.71 0.774731
Target:  5'- -cGCucgacGAGcCGCCGAGggcCGCGACCGg -3'
miRNA:   3'- gaCGu----CUU-GCGGCUCaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 137593 0.71 0.774731
Target:  5'- gUGCGGGGagccgcCGCCGGcggUCGCGGCgGCg -3'
miRNA:   3'- gACGUCUU------GCGGCUca-AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 29756 0.71 0.783814
Target:  5'- -cGCcGAgcccGCGCCGAGcgUCuCGGCCGCu -3'
miRNA:   3'- gaCGuCU----UGCGGCUCa-AGcGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 141634 0.7 0.792765
Target:  5'- -aGCgacgGGAAgGCCGGcGUggcCGCGGCCGCc -3'
miRNA:   3'- gaCG----UCUUgCGGCU-CAa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 106229 0.7 0.792765
Target:  5'- -cGCGGccGCGCuCGGG-UCGCaGACCGCc -3'
miRNA:   3'- gaCGUCu-UGCG-GCUCaAGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 117628 0.7 0.792765
Target:  5'- -cGaCAGGGCGCCGAccgCGCGGCCcCg -3'
miRNA:   3'- gaC-GUCUUGCGGCUcaaGCGCUGGcG- -5'
10730 5' -55.5 NC_002794.1 + 69405 0.7 0.792765
Target:  5'- -aGCGGccaGGCGCCGAGc-CGCGACagGCa -3'
miRNA:   3'- gaCGUC---UUGCGGCUCaaGCGCUGg-CG- -5'
10730 5' -55.5 NC_002794.1 + 111836 0.7 0.792765
Target:  5'- -cGCGGAACGucugcCCGAGagccgUCGCcACCGCc -3'
miRNA:   3'- gaCGUCUUGC-----GGCUCa----AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 17477 0.7 0.801578
Target:  5'- -cGCuccacACGCCGcGUUUGCGAUCGCc -3'
miRNA:   3'- gaCGucu--UGCGGCuCAAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 38498 0.7 0.801578
Target:  5'- -cGCGGcGGCGCCGG--UCGCcGCCGCc -3'
miRNA:   3'- gaCGUC-UUGCGGCUcaAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 91469 0.7 0.801578
Target:  5'- -aGCuG-ACGCCGGGcgagCGCGACCaGCu -3'
miRNA:   3'- gaCGuCuUGCGGCUCaa--GCGCUGG-CG- -5'
10730 5' -55.5 NC_002794.1 + 181588 0.7 0.801578
Target:  5'- gCUGCGGGccGCGaCCGGG-UCGCcccguuGCCGCa -3'
miRNA:   3'- -GACGUCU--UGC-GGCUCaAGCGc-----UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 90375 0.7 0.801578
Target:  5'- gUGCAGG--GCCGGGUcUCGCcGuCCGCg -3'
miRNA:   3'- gACGUCUugCGGCUCA-AGCG-CuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 134200 0.7 0.801578
Target:  5'- gCUGguGGGgGCCGucGGUcgccaaGCGACCGCc -3'
miRNA:   3'- -GACguCUUgCGGC--UCAag----CGCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.