miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 194062 0.69 0.851101
Target:  5'- -cGCcgAGAGCGCCGccUUCGUcGCCGCc -3'
miRNA:   3'- gaCG--UCUUGCGGCucAAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 156396 0.69 0.851101
Target:  5'- --cUAGAGCgGCCGGcgcCGCGGCCGCg -3'
miRNA:   3'- gacGUCUUG-CGGCUcaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 187523 0.69 0.851101
Target:  5'- -cGCGGAGgaacucccCGCCGc---CGCGACCGCc -3'
miRNA:   3'- gaCGUCUU--------GCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 157737 0.69 0.851101
Target:  5'- -aGCGGAggagagcguucGCGCUcAGUUCG-GGCCGCu -3'
miRNA:   3'- gaCGUCU-----------UGCGGcUCAAGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 100371 0.69 0.851101
Target:  5'- aCUGCgAGGugGCCGAcguccgcggcGUggacgacguggCGUGGCCGCu -3'
miRNA:   3'- -GACG-UCUugCGGCU----------CAa----------GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 145570 0.69 0.858728
Target:  5'- -cGCGGAcgaGCGCCGAcGga-GCGGCgGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCU-CaagCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 55804 0.69 0.858728
Target:  5'- -aGCGcAGCGCCGGG--CGCGGgCGCg -3'
miRNA:   3'- gaCGUcUUGCGGCUCaaGCGCUgGCG- -5'
10730 5' -55.5 NC_002794.1 + 118882 0.69 0.858728
Target:  5'- gCUGCAGGucgGC-CCGGuGUUCGCGuagguCCGUg -3'
miRNA:   3'- -GACGUCU---UGcGGCU-CAAGCGCu----GGCG- -5'
10730 5' -55.5 NC_002794.1 + 148620 0.69 0.866159
Target:  5'- cCUGCAGAu--CUGGGUcuccgaUCGCGGCgGCg -3'
miRNA:   3'- -GACGUCUugcGGCUCA------AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 11896 0.69 0.869076
Target:  5'- -aGCGGGuucgugcuCGCCGGGUUCcugacgacggccacgGUGAUCGCg -3'
miRNA:   3'- gaCGUCUu-------GCGGCUCAAG---------------CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 47938 0.69 0.871242
Target:  5'- -cGCAGAucgGCGCCGcGcgUCccggcgccggcuggGCGACCGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCuCa-AG--------------CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 99694 0.69 0.872675
Target:  5'- aCUGCGcgcuGGCGCCGcGGauguucuUUCGCGACCGg -3'
miRNA:   3'- -GACGUc---UUGCGGC-UC-------AAGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 57925 0.69 0.873389
Target:  5'- gCUGCAGAA-GCuCGAcUUCGCcGACgCGCu -3'
miRNA:   3'- -GACGUCUUgCG-GCUcAAGCG-CUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 3725 0.69 0.873389
Target:  5'- ---gGGAACgGuuGGGacaUCGCGACCGCa -3'
miRNA:   3'- gacgUCUUG-CggCUCa--AGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 143042 0.69 0.878326
Target:  5'- gUGCAGGGcCGCCaGGUUgaggccguagcgccCGCGGCgGCa -3'
miRNA:   3'- gACGUCUU-GCGGcUCAA--------------GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 13252 0.69 0.879023
Target:  5'- gCUGCuccuCGCCGGGcugugguggaGCGGCCGCu -3'
miRNA:   3'- -GACGucuuGCGGCUCaag-------CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 49513 0.69 0.880411
Target:  5'- -cGCu---CGCCGGGUacauggguUCGCGcGCCGCg -3'
miRNA:   3'- gaCGucuuGCGGCUCA--------AGCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 111312 0.69 0.880411
Target:  5'- -cGaCGGAGaCGCCGGGccagcggCGCGgGCCGCa -3'
miRNA:   3'- gaC-GUCUU-GCGGCUCaa-----GCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 147260 0.69 0.880411
Target:  5'- -gGCAG-ACGCuCGAGcugcCGUGGCCGUc -3'
miRNA:   3'- gaCGUCuUGCG-GCUCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 121974 0.69 0.880411
Target:  5'- gUGCGGcucgguccCGCCGAG--CGCGGCCGg -3'
miRNA:   3'- gACGUCuu------GCGGCUCaaGCGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.