miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 188287 0.68 0.887222
Target:  5'- aUGCAGGGCGCCG----CGCG-CCGg -3'
miRNA:   3'- gACGUCUUGCGGCucaaGCGCuGGCg -5'
10730 5' -55.5 NC_002794.1 + 106359 0.68 0.887222
Target:  5'- -gGCGGGcggGCGCCG-GUUCGCgcggagggcaGACgGCg -3'
miRNA:   3'- gaCGUCU---UGCGGCuCAAGCG----------CUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 93721 0.68 0.887222
Target:  5'- cCUGCuGuuGCGCCGc--UCGCG-CCGCg -3'
miRNA:   3'- -GACGuCu-UGCGGCucaAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 59121 0.68 0.887222
Target:  5'- -cGCGGccaccGAgGCCGAcUUCGCGcaggGCCGCg -3'
miRNA:   3'- gaCGUC-----UUgCGGCUcAAGCGC----UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 36270 0.68 0.887222
Target:  5'- gUGUA--ACGCCGcGUccCGCGACUGCg -3'
miRNA:   3'- gACGUcuUGCGGCuCAa-GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 31685 0.68 0.893817
Target:  5'- gUGCGagauGAACaGCCGGGUcaugUCGCaGACCuGCg -3'
miRNA:   3'- gACGU----CUUG-CGGCUCA----AGCG-CUGG-CG- -5'
10730 5' -55.5 NC_002794.1 + 184579 0.68 0.893817
Target:  5'- -cGCGGcGGCGgCGGccacgCGCGGCCGCg -3'
miRNA:   3'- gaCGUC-UUGCgGCUcaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 185460 0.68 0.893817
Target:  5'- -cGCGacaAACGCCGcGggCgGCGGCCGCg -3'
miRNA:   3'- gaCGUc--UUGCGGCuCaaG-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 70050 0.68 0.893817
Target:  5'- -cGUAGGuCGCCcGGUcggGCGGCCGCa -3'
miRNA:   3'- gaCGUCUuGCGGcUCAag-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 18274 0.68 0.893817
Target:  5'- aUGCGcGGCGCCGAGccUUCGaacCGAgCCGCc -3'
miRNA:   3'- gACGUcUUGCGGCUC--AAGC---GCU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 80410 0.68 0.899564
Target:  5'- -cGCGGcccagguGGCGCCGGG--CGgGGCCGCc -3'
miRNA:   3'- gaCGUC-------UUGCGGCUCaaGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 95761 0.68 0.900192
Target:  5'- -cGCGGGGCGgCGGc--CGCGACgGCg -3'
miRNA:   3'- gaCGUCUUGCgGCUcaaGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 189901 0.68 0.900192
Target:  5'- -cGCcgucAGCGCCGccg-CGCGACCGCc -3'
miRNA:   3'- gaCGuc--UUGCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 184948 0.68 0.900192
Target:  5'- -cGCAGcuGCGCCGGcccgCGCaGCCGCu -3'
miRNA:   3'- gaCGUCu-UGCGGCUcaa-GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 169457 0.68 0.900192
Target:  5'- gUGCA--ACGgUGGGUUCgggGCGACCGUg -3'
miRNA:   3'- gACGUcuUGCgGCUCAAG---CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 21708 0.68 0.900192
Target:  5'- -gGCGuccacGGGCGCUGcg-UCGCGAUCGCg -3'
miRNA:   3'- gaCGU-----CUUGCGGCucaAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 93831 0.68 0.900192
Target:  5'- -gGCGGccauCGCCGAGaUCauggaCGGCCGCg -3'
miRNA:   3'- gaCGUCuu--GCGGCUCaAGc----GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 103909 0.68 0.90268
Target:  5'- -gGCgAGAACGCCGcgcaacgcggcgagcAGcgcgCGUGGCCGCc -3'
miRNA:   3'- gaCG-UCUUGCGGC---------------UCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 149649 0.68 0.903911
Target:  5'- aUGCGGuuCGCCGAGgaggccgagcgggggCGCGucgcgcucgacugGCCGCg -3'
miRNA:   3'- gACGUCuuGCGGCUCaa-------------GCGC-------------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 48037 0.68 0.906345
Target:  5'- -cGCcGGACGCCGAGUgCGUG-CUGg -3'
miRNA:   3'- gaCGuCUUGCGGCUCAaGCGCuGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.