miRNA display CGI


Results 101 - 120 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 80619 0.68 0.906345
Target:  5'- uCUGCcu-GCcgGCCGAGcaccUCGCGACCGg -3'
miRNA:   3'- -GACGucuUG--CGGCUCa---AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 38440 0.68 0.906345
Target:  5'- -gGCGGGcCGgaCUGAGgagccggCGCGGCCGCg -3'
miRNA:   3'- gaCGUCUuGC--GGCUCaa-----GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 48037 0.68 0.906345
Target:  5'- -cGCcGGACGCCGAGUgCGUG-CUGg -3'
miRNA:   3'- gaCGuCUUGCGGCUCAaGCGCuGGCg -5'
10730 5' -55.5 NC_002794.1 + 16245 0.68 0.906345
Target:  5'- -gGCAcGucccCGCCGAGUacucguucgaUCGCG-CCGCg -3'
miRNA:   3'- gaCGU-Cuu--GCGGCUCA----------AGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 13050 0.68 0.906345
Target:  5'- uCUGCGGAACcCCacuauuugagGGGgccgCGCGACCGg -3'
miRNA:   3'- -GACGUCUUGcGG----------CUCaa--GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 95491 0.68 0.911105
Target:  5'- uUGCGGAACgagcucgGCC-AGUaucucuaUgGCGACCGCg -3'
miRNA:   3'- gACGUCUUG-------CGGcUCA-------AgCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 52836 0.68 0.91169
Target:  5'- -cGUAGAG-GCCGGucagcacGUUCGCcacGGCCGCg -3'
miRNA:   3'- gaCGUCUUgCGGCU-------CAAGCG---CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 86766 0.68 0.912273
Target:  5'- -gGUGGAuCGCCGGGaaCGaacCGGCCGCu -3'
miRNA:   3'- gaCGUCUuGCGGCUCaaGC---GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 8625 0.68 0.912273
Target:  5'- gUGCGGAGCGCgGuGgaaGaCGugCGCg -3'
miRNA:   3'- gACGUCUUGCGgCuCaagC-GCugGCG- -5'
10730 5' -55.5 NC_002794.1 + 62240 0.68 0.912273
Target:  5'- -cGCcuGACGCUGAacguGUUCGCG-CUGCg -3'
miRNA:   3'- gaCGucUUGCGGCU----CAAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 112822 0.68 0.912853
Target:  5'- uCUGCucGGcCGCCGAGUacggcugcucgucggCGCG-CCGCa -3'
miRNA:   3'- -GACGu-CUuGCGGCUCAa--------------GCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 84948 0.67 0.916287
Target:  5'- -cGCGGAGCGCCcccGGcaCGCGgauccuuggccccgGCCGCg -3'
miRNA:   3'- gaCGUCUUGCGGc--UCaaGCGC--------------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 14777 0.67 0.917973
Target:  5'- -cGCuGAGgcCGgCGAGgccggCGUGACCGCg -3'
miRNA:   3'- gaCGuCUU--GCgGCUCaa---GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 185210 0.67 0.917973
Target:  5'- -cGCGGcucGCGCCgcggaGAGUcgCGcCGACCGCc -3'
miRNA:   3'- gaCGUCu--UGCGG-----CUCAa-GC-GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 66870 0.67 0.917973
Target:  5'- -cGCGGcguGCgGCUGAGccaUCGCGGCCGa -3'
miRNA:   3'- gaCGUCu--UG-CGGCUCa--AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 53774 0.67 0.923446
Target:  5'- -gGCGGGACGCC-----CGCGACgCGCc -3'
miRNA:   3'- gaCGUCUUGCGGcucaaGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 95819 0.67 0.923446
Target:  5'- -aGCGGcGGCgGCCGGGggaGCGGCgGCg -3'
miRNA:   3'- gaCGUC-UUG-CGGCUCaagCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 108155 0.67 0.923446
Target:  5'- -cGCcgGGAGCGCCGg---CGCGaagacGCCGCg -3'
miRNA:   3'- gaCG--UCUUGCGGCucaaGCGC-----UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 153333 0.67 0.923446
Target:  5'- gUGCAGAACGgCGAcgcguguugucaGgaCGCGGCCcgGCu -3'
miRNA:   3'- gACGUCUUGCgGCU------------CaaGCGCUGG--CG- -5'
10730 5' -55.5 NC_002794.1 + 16166 0.67 0.923446
Target:  5'- -gGCAuGAACGgCGGGUggcCGACCGUg -3'
miRNA:   3'- gaCGU-CUUGCgGCUCAagcGCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.