miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 116076 0.66 0.951489
Target:  5'- -cGCGGAGCGCuCGg---CGCGGCgGUc -3'
miRNA:   3'- gaCGUCUUGCG-GCucaaGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 121644 0.66 0.951489
Target:  5'- -gGgAGAACGCCGucgccGUaaCGCGACgGCc -3'
miRNA:   3'- gaCgUCUUGCGGCu----CAa-GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 193281 0.66 0.951489
Target:  5'- -aGCGGcguGCGCCGGuagUCGCcGuCCGCu -3'
miRNA:   3'- gaCGUCu--UGCGGCUca-AGCG-CuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 137954 0.66 0.951489
Target:  5'- -gGCGGAugcguuCGCCGAGgcccugggagUUGUcGCCGCa -3'
miRNA:   3'- gaCGUCUu-----GCGGCUCa---------AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 88045 0.66 0.951489
Target:  5'- aUGCuaAGAcaguaaacgcGCGCgCGAGggggCGgGGCCGCg -3'
miRNA:   3'- gACG--UCU----------UGCG-GCUCaa--GCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 119519 0.66 0.951489
Target:  5'- -cGCGGAGCcgGCCGcggaccccucGUcCGCGGCCGUc -3'
miRNA:   3'- gaCGUCUUG--CGGCu---------CAaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 150332 0.66 0.951088
Target:  5'- gUGCAGugGACGCaCGGcuGUcugcucgUCGCGGCCGa -3'
miRNA:   3'- gACGUC--UUGCG-GCU--CA-------AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 120032 0.66 0.951088
Target:  5'- -cGCGGgGACGUCGucaugacggcggcGGUg-GCGGCCGCg -3'
miRNA:   3'- gaCGUC-UUGCGGC-------------UCAagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 178313 0.66 0.95028
Target:  5'- -gGC-GAACGCCGAaccUCGUagagccgcucugguGACCGCg -3'
miRNA:   3'- gaCGuCUUGCGGCUca-AGCG--------------CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 120447 0.66 0.94905
Target:  5'- -cGUGGAACGCCGcGUcggccuggcucgauuUCGCGcggccCCGCc -3'
miRNA:   3'- gaCGUCUUGCGGCuCA---------------AGCGCu----GGCG- -5'
10730 5' -55.5 NC_002794.1 + 34859 0.66 0.94738
Target:  5'- -aGCGGG-CGCCGcGGgcgcCGCGgacGCCGCg -3'
miRNA:   3'- gaCGUCUuGCGGC-UCaa--GCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 42047 0.66 0.94738
Target:  5'- aUGCGGAGCGCgugccagaUGAuGUUgGCcgacuGGCCGCg -3'
miRNA:   3'- gACGUCUUGCG--------GCU-CAAgCG-----CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 30995 0.66 0.94738
Target:  5'- -gGCGGGGucuuCGCCGGacgUCGCcGCCGCc -3'
miRNA:   3'- gaCGUCUU----GCGGCUca-AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 107878 0.66 0.94738
Target:  5'- -cGCGGAggcgGCGCgGcGggUGCGGCUGCc -3'
miRNA:   3'- gaCGUCU----UGCGgCuCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 126318 0.66 0.94738
Target:  5'- -aGCGGAGCGugacCCGc--UCGCuGACCGCc -3'
miRNA:   3'- gaCGUCUUGC----GGCucaAGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 181812 0.66 0.94738
Target:  5'- --cCAGAaccgcACGUCgGGGUUCGCGGCCa- -3'
miRNA:   3'- gacGUCU-----UGCGG-CUCAAGCGCUGGcg -5'
10730 5' -55.5 NC_002794.1 + 114639 0.66 0.946957
Target:  5'- -cGCGGAGCucgagcuGCCGGugcuGUUCGCG-CgCGCg -3'
miRNA:   3'- gaCGUCUUG-------CGGCU----CAAGCGCuG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 184432 0.66 0.946104
Target:  5'- gUGCAGAcuguacaucugagcGCGCCGcugccgccCGCGgGCCGCg -3'
miRNA:   3'- gACGUCU--------------UGCGGCucaa----GCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 63648 0.67 0.944808
Target:  5'- uCUGCGuGAcCGCCaacgucucggacgacGAG--CGCGGCCGCg -3'
miRNA:   3'- -GACGU-CUuGCGG---------------CUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 153691 0.67 0.943048
Target:  5'- -cGCGcGAccgGCGaCCG-GUUUaGCGACCGCg -3'
miRNA:   3'- gaCGU-CU---UGC-GGCuCAAG-CGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.