miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 34233 0.67 0.933704
Target:  5'- gUGCAGGA-GCUGcacgCGCGGCUGCc -3'
miRNA:   3'- gACGUCUUgCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194911 0.67 0.933704
Target:  5'- gUGCu---CGCCGAcagcaGCGGCCGCa -3'
miRNA:   3'- gACGucuuGCGGCUcaag-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 26086 0.67 0.933704
Target:  5'- -cGCGGGgcaGCGCCGAcGgccccgGCGAUCGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCU-Caag---CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 115896 0.67 0.933213
Target:  5'- -cGCGGAGCGCgggGGGUUCGUGggguggacuuggcGCgGCg -3'
miRNA:   3'- gaCGUCUUGCGg--CUCAAGCGC-------------UGgCG- -5'
10730 5' -55.5 NC_002794.1 + 192458 0.67 0.932223
Target:  5'- -cGCAGucgcgcgccaccAGCGCCGAGcccUCGUccgccucgucccacGGCCGCg -3'
miRNA:   3'- gaCGUC------------UUGCGGCUCa--AGCG--------------CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 177547 0.67 0.931725
Target:  5'- -cGCGGAACGgaauaaaaagggaCGAGcUUCGCGacGCCGUg -3'
miRNA:   3'- gaCGUCUUGCg------------GCUC-AAGCGC--UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 117423 0.67 0.930723
Target:  5'- gCUGCAGGAgcUGCCgcGAGgcgUUGCGgaugucgcggaagacGCCGCg -3'
miRNA:   3'- -GACGUCUU--GCGG--CUCa--AGCGC---------------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 113907 0.67 0.930723
Target:  5'- uCUGCAGGaaggccuccaggucgGcCGCCGAGgcgaCG-GGCCGCu -3'
miRNA:   3'- -GACGUCU---------------U-GCGGCUCaa--GCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 180915 0.67 0.930723
Target:  5'- -cGCGGucuCGCCGgcgccgucggaggucGGUcUCGCGuCCGCg -3'
miRNA:   3'- gaCGUCuu-GCGGC---------------UCA-AGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 62338 0.67 0.928689
Target:  5'- -gGCGGAgcccGCGCCGgcgcaccuGGUcUCGUugGACCGCu -3'
miRNA:   3'- gaCGUCU----UGCGGC--------UCA-AGCG--CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 127183 0.67 0.928689
Target:  5'- -cGCAGu-CGUCGc---CGCGGCCGCa -3'
miRNA:   3'- gaCGUCuuGCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194393 0.67 0.928689
Target:  5'- -aGCu--GCGCCGcccggucGUUCGCGuCCGCc -3'
miRNA:   3'- gaCGucuUGCGGCu------CAAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 32308 0.67 0.928689
Target:  5'- -gGCGGccGCGCCGGc--CGCGGCCGg -3'
miRNA:   3'- gaCGUCu-UGCGGCUcaaGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 76551 0.67 0.927659
Target:  5'- -cGCGGucgcGCGCCGGGUacucacccggccCGCcGCCGCg -3'
miRNA:   3'- gaCGUCu---UGCGGCUCAa-----------GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 153333 0.67 0.923446
Target:  5'- gUGCAGAACGgCGAcgcguguugucaGgaCGCGGCCcgGCu -3'
miRNA:   3'- gACGUCUUGCgGCU------------CaaGCGCUGG--CG- -5'
10730 5' -55.5 NC_002794.1 + 16166 0.67 0.923446
Target:  5'- -gGCAuGAACGgCGGGUggcCGACCGUg -3'
miRNA:   3'- gaCGU-CUUGCgGCUCAagcGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 141433 0.67 0.923446
Target:  5'- -gGCgGGGGCGCCGGGggCGcCGGgaGCg -3'
miRNA:   3'- gaCG-UCUUGCGGCUCaaGC-GCUggCG- -5'
10730 5' -55.5 NC_002794.1 + 53524 0.67 0.923446
Target:  5'- aUGgAGAA-GCCGuGggCGCGgcgGCCGCa -3'
miRNA:   3'- gACgUCUUgCGGCuCaaGCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 125929 0.67 0.923446
Target:  5'- gCUGCu---CGUCGAGcaguuccUCGUGGCCGCc -3'
miRNA:   3'- -GACGucuuGCGGCUCa------AGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 108155 0.67 0.923446
Target:  5'- -cGCcgGGAGCGCCGg---CGCGaagacGCCGCg -3'
miRNA:   3'- gaCG--UCUUGCGGCucaaGCGC-----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.