miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 1 0.78 0.402641
Target:  5'- ----cGAGCGCCGAGa-CGCGGCCGCg -3'
miRNA:   3'- gacguCUUGCGGCUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 300 0.66 0.95797
Target:  5'- -cGCcGAACGCCGGGcccgccccacccccaCGCGcgcGCCGCc -3'
miRNA:   3'- gaCGuCUUGCGGCUCaa-------------GCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 3725 0.69 0.873389
Target:  5'- ---gGGAACgGuuGGGacaUCGCGACCGCa -3'
miRNA:   3'- gacgUCUUG-CggCUCa--AGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 8625 0.68 0.912273
Target:  5'- gUGCGGAGCGCgGuGgaaGaCGugCGCg -3'
miRNA:   3'- gACGUCUUGCGgCuCaagC-GCugGCG- -5'
10730 5' -55.5 NC_002794.1 + 8738 0.7 0.835282
Target:  5'- -cGUGGAGCGCgugucuCGGGcgugUCGCGACgGCg -3'
miRNA:   3'- gaCGUCUUGCG------GCUCa---AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 11532 0.71 0.746786
Target:  5'- gCUGCGGG-CGaCCGAGgacCGCGGCUGg -3'
miRNA:   3'- -GACGUCUuGC-GGCUCaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 11896 0.69 0.869076
Target:  5'- -aGCGGGuucgugcuCGCCGGGUUCcugacgacggccacgGUGAUCGCg -3'
miRNA:   3'- gaCGUCUu-------GCGGCUCAAG---------------CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 12312 0.66 0.959049
Target:  5'- -cGCGGGACuccuCCGcGGUccgCGUGACCGUg -3'
miRNA:   3'- gaCGUCUUGc---GGC-UCAa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 13050 0.68 0.906345
Target:  5'- uCUGCGGAACcCCacuauuugagGGGgccgCGCGACCGg -3'
miRNA:   3'- -GACGUCUUGcGG----------CUCaa--GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 13252 0.69 0.879023
Target:  5'- gCUGCuccuCGCCGGGcugugguggaGCGGCCGCu -3'
miRNA:   3'- -GACGucuuGCGGCUCaag-------CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 14472 0.76 0.501034
Target:  5'- -aGCGGcGCGCCGcgcucgcuGUUCGCGGCgGCg -3'
miRNA:   3'- gaCGUCuUGCGGCu-------CAAGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 14589 0.66 0.959049
Target:  5'- -aGCGGGccguggcgagcGCGCCGGGcacCGCGACgGg -3'
miRNA:   3'- gaCGUCU-----------UGCGGCUCaa-GCGCUGgCg -5'
10730 5' -55.5 NC_002794.1 + 14777 0.67 0.917973
Target:  5'- -cGCuGAGgcCGgCGAGgccggCGUGACCGCg -3'
miRNA:   3'- gaCGuCUU--GCgGCUCaa---GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 16166 0.67 0.923446
Target:  5'- -gGCAuGAACGgCGGGUggcCGACCGUg -3'
miRNA:   3'- gaCGU-CUUGCgGCUCAagcGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 16245 0.68 0.906345
Target:  5'- -gGCAcGucccCGCCGAGUacucguucgaUCGCG-CCGCg -3'
miRNA:   3'- gaCGU-Cuu--GCGGCUCA----------AGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 16928 0.66 0.959049
Target:  5'- aCUGUcGucgGCGCCGAGc-CGCcACCGCc -3'
miRNA:   3'- -GACGuCu--UGCGGCUCaaGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 17477 0.7 0.801578
Target:  5'- -cGCuccacACGCCGcGUUUGCGAUCGCc -3'
miRNA:   3'- gaCGucu--UGCGGCuCAAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 18274 0.68 0.893817
Target:  5'- aUGCGcGGCGCCGAGccUUCGaacCGAgCCGCc -3'
miRNA:   3'- gACGUcUUGCGGCUC--AAGC---GCU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 18498 0.73 0.658676
Target:  5'- -aGCAGuaGAgGCCGcGaaCGCGACCGCg -3'
miRNA:   3'- gaCGUC--UUgCGGCuCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 19520 0.7 0.827103
Target:  5'- -cGCucGGAGCGCCGGcgcggCGCGGCCcGCc -3'
miRNA:   3'- gaCG--UCUUGCGGCUcaa--GCGCUGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.