miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 20982 0.66 0.951489
Target:  5'- -gGCAGcGGCGgCGGca--GCGACCGCg -3'
miRNA:   3'- gaCGUC-UUGCgGCUcaagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 21708 0.68 0.900192
Target:  5'- -gGCGuccacGGGCGCUGcg-UCGCGAUCGCg -3'
miRNA:   3'- gaCGU-----CUUGCGGCucaAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 22605 0.67 0.943048
Target:  5'- -gGuCGGGACGCuCGAGccgaUCG-GGCCGCu -3'
miRNA:   3'- gaC-GUCUUGCG-GCUCa---AGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 22903 0.72 0.737267
Target:  5'- uUGguGGACGgCGGcGacCGCGGCCGCc -3'
miRNA:   3'- gACguCUUGCgGCU-CaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 26086 0.67 0.933704
Target:  5'- -cGCGGGgcaGCGCCGAcGgccccgGCGAUCGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCU-Caag---CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 29756 0.71 0.783814
Target:  5'- -cGCcGAgcccGCGCCGAGcgUCuCGGCCGCu -3'
miRNA:   3'- gaCGuCU----UGCGGCUCa-AGcGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 30995 0.66 0.94738
Target:  5'- -gGCGGGGucuuCGCCGGacgUCGCcGCCGCc -3'
miRNA:   3'- gaCGUCUU----GCGGCUca-AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 31685 0.68 0.893817
Target:  5'- gUGCGagauGAACaGCCGGGUcaugUCGCaGACCuGCg -3'
miRNA:   3'- gACGU----CUUG-CGGCUCA----AGCG-CUGG-CG- -5'
10730 5' -55.5 NC_002794.1 + 32308 0.67 0.928689
Target:  5'- -gGCGGccGCGCCGGc--CGCGGCCGg -3'
miRNA:   3'- gaCGUCu-UGCGGCUcaaGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 33147 0.66 0.959049
Target:  5'- gCUGCGGGAC-CCGAc--CGUGuuCCGCa -3'
miRNA:   3'- -GACGUCUUGcGGCUcaaGCGCu-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 34233 0.67 0.933704
Target:  5'- gUGCAGGA-GCUGcacgCGCGGCUGCc -3'
miRNA:   3'- gACGUCUUgCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 34742 0.7 0.838504
Target:  5'- -cGCAGAGCGCgCGAcggCGCGgugggacgcggcacgGCCGCc -3'
miRNA:   3'- gaCGUCUUGCG-GCUcaaGCGC---------------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 34859 0.66 0.94738
Target:  5'- -aGCGGG-CGCCGcGGgcgcCGCGgacGCCGCg -3'
miRNA:   3'- gaCGUCUuGCGGC-UCaa--GCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 36270 0.68 0.887222
Target:  5'- gUGUA--ACGCCGcGUccCGCGACUGCg -3'
miRNA:   3'- gACGUcuUGCGGCuCAa-GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 36566 0.72 0.698399
Target:  5'- gCUGCAGAcacgcgcCGCCGAGcagGCGGuCCGCg -3'
miRNA:   3'- -GACGUCUu------GCGGCUCaagCGCU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 36895 0.75 0.55602
Target:  5'- gUGCAGAGCGuCCaGAGgUCGCggcgccggccccgcGACCGCg -3'
miRNA:   3'- gACGUCUUGC-GG-CUCaAGCG--------------CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 37757 0.7 0.810244
Target:  5'- -cGCGGcGGCGCCGGcGggaGCGGCCGUc -3'
miRNA:   3'- gaCGUC-UUGCGGCU-CaagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 38440 0.68 0.906345
Target:  5'- -gGCGGGcCGgaCUGAGgagccggCGCGGCCGCg -3'
miRNA:   3'- gaCGUCUuGC--GGCUCaa-----GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 38498 0.7 0.801578
Target:  5'- -cGCGGcGGCGCCGG--UCGCcGCCGCc -3'
miRNA:   3'- gaCGUC-UUGCGGCUcaAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 42047 0.66 0.94738
Target:  5'- aUGCGGAGCGCgugccagaUGAuGUUgGCcgacuGGCCGCg -3'
miRNA:   3'- gACGUCUUGCG--------GCU-CAAgCG-----CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.