miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 43251 0.73 0.658676
Target:  5'- -gGcCGGAACGCCGGGUgguagcacUCGCaGAuCCGCu -3'
miRNA:   3'- gaC-GUCUUGCGGCUCA--------AGCG-CU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 44313 0.66 0.955377
Target:  5'- -cGgGGAGCGaCCGcGagCGCGGCgGCg -3'
miRNA:   3'- gaCgUCUUGC-GGCuCaaGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 47735 0.74 0.608617
Target:  5'- -aGCAGccCGCCGGGUccacgUgGCGGCCGUg -3'
miRNA:   3'- gaCGUCuuGCGGCUCA-----AgCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 47938 0.69 0.871242
Target:  5'- -cGCAGAucgGCGCCGcGcgUCccggcgccggcuggGCGACCGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCuCa-AG--------------CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 48037 0.68 0.906345
Target:  5'- -cGCcGGACGCCGAGUgCGUG-CUGg -3'
miRNA:   3'- gaCGuCUUGCGGCUCAaGCGCuGGCg -5'
10730 5' -55.5 NC_002794.1 + 48627 0.7 0.835282
Target:  5'- -cGCGGAGCgGCCGucgGGgccCGCGAgCCGCc -3'
miRNA:   3'- gaCGUCUUG-CGGC---UCaa-GCGCU-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 48890 0.67 0.938489
Target:  5'- -gGCAGGccagcguUGCCGcAGcUCGgGGCCGCu -3'
miRNA:   3'- gaCGUCUu------GCGGC-UCaAGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 49513 0.69 0.880411
Target:  5'- -cGCu---CGCCGGGUacauggguUCGCGcGCCGCg -3'
miRNA:   3'- gaCGucuuGCGGCUCA--------AGCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 52836 0.68 0.91169
Target:  5'- -cGUAGAG-GCCGGucagcacGUUCGCcacGGCCGCg -3'
miRNA:   3'- gaCGUCUUgCGGCU-------CAAGCG---CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 53524 0.67 0.923446
Target:  5'- aUGgAGAA-GCCGuGggCGCGgcgGCCGCa -3'
miRNA:   3'- gACgUCUUgCGGCuCaaGCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 53774 0.67 0.923446
Target:  5'- -gGCGGGACGCC-----CGCGACgCGCc -3'
miRNA:   3'- gaCGUCUUGCGGcucaaGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 54383 0.67 0.943048
Target:  5'- cCUGCAGAcccGCGUCGAcgcccgccUCGCGGagcUCGCa -3'
miRNA:   3'- -GACGUCU---UGCGGCUca------AGCGCU---GGCG- -5'
10730 5' -55.5 NC_002794.1 + 54999 0.66 0.962507
Target:  5'- -gGCGGcgacuCGCCGGGcgucCGCcGCCGCg -3'
miRNA:   3'- gaCGUCuu---GCGGCUCaa--GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 55165 0.66 0.959049
Target:  5'- -aGUcGAGCGCCGAGcggGCGACUcgagGCg -3'
miRNA:   3'- gaCGuCUUGCGGCUCaagCGCUGG----CG- -5'
10730 5' -55.5 NC_002794.1 + 55804 0.69 0.858728
Target:  5'- -aGCGcAGCGCCGGG--CGCGGgCGCg -3'
miRNA:   3'- gaCGUcUUGCGGCUCaaGCGCUgGCG- -5'
10730 5' -55.5 NC_002794.1 + 57925 0.69 0.873389
Target:  5'- gCUGCAGAA-GCuCGAcUUCGCcGACgCGCu -3'
miRNA:   3'- -GACGUCUUgCG-GCUcAAGCG-CUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 58421 0.72 0.737267
Target:  5'- gUGCGGccgccgccaGACGCCGAGgccacgcugCGCcuGGCCGCg -3'
miRNA:   3'- gACGUC---------UUGCGGCUCaa-------GCG--CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 58524 0.67 0.923446
Target:  5'- --aCGGGcACGCCGAGgccuucgcCGCGGCgCGCg -3'
miRNA:   3'- gacGUCU-UGCGGCUCaa------GCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 58841 0.7 0.818755
Target:  5'- -cGCgAGGACGCCGAcGUgcagcucgUCGCcGACCGg -3'
miRNA:   3'- gaCG-UCUUGCGGCU-CA--------AGCG-CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 59121 0.68 0.887222
Target:  5'- -cGCGGccaccGAgGCCGAcUUCGCGcaggGCCGCg -3'
miRNA:   3'- gaCGUC-----UUgCGGCUcAAGCGC----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.