miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 60954 0.67 0.933704
Target:  5'- cCUGCucgacGAGCGCCGGGccuacgCGCGccuCCGg -3'
miRNA:   3'- -GACGu----CUUGCGGCUCaa----GCGCu--GGCg -5'
10730 5' -55.5 NC_002794.1 + 62098 0.7 0.818755
Target:  5'- -cGCGGcGCGCCGGacggucuggugcGUgucgaGCGACCGCc -3'
miRNA:   3'- gaCGUCuUGCGGCU------------CAag---CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 62240 0.68 0.912273
Target:  5'- -cGCcuGACGCUGAacguGUUCGCG-CUGCg -3'
miRNA:   3'- gaCGucUUGCGGCU----CAAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 62338 0.67 0.928689
Target:  5'- -gGCGGAgcccGCGCCGgcgcaccuGGUcUCGUugGACCGCu -3'
miRNA:   3'- gaCGUCU----UGCGGC--------UCA-AGCG--CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 62686 0.7 0.835282
Target:  5'- cCUGCGGGugcaGCUGuGUcgGCGGCCGCc -3'
miRNA:   3'- -GACGUCUug--CGGCuCAagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 63162 0.66 0.955377
Target:  5'- gCUGCuGcACgGCCGAGgcCGCGAagcggUCGCg -3'
miRNA:   3'- -GACGuCuUG-CGGCUCaaGCGCU-----GGCG- -5'
10730 5' -55.5 NC_002794.1 + 63648 0.67 0.944808
Target:  5'- uCUGCGuGAcCGCCaacgucucggacgacGAG--CGCGGCCGCg -3'
miRNA:   3'- -GACGU-CUuGCGG---------------CUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 64815 0.65 0.964157
Target:  5'- -cGCGGAcggcggcgagccgGCGCCGAcgaccggacggCGCGGCgGCa -3'
miRNA:   3'- gaCGUCU-------------UGCGGCUcaa--------GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 66870 0.67 0.917973
Target:  5'- -cGCGGcguGCgGCUGAGccaUCGCGGCCGa -3'
miRNA:   3'- gaCGUCu--UG-CGGCUCa--AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 69405 0.7 0.792765
Target:  5'- -aGCGGccaGGCGCCGAGc-CGCGACagGCa -3'
miRNA:   3'- gaCGUC---UUGCGGCUCaaGCGCUGg-CG- -5'
10730 5' -55.5 NC_002794.1 + 70050 0.68 0.893817
Target:  5'- -cGUAGGuCGCCcGGUcggGCGGCCGCa -3'
miRNA:   3'- gaCGUCUuGCGGcUCAag-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 70568 0.66 0.959049
Target:  5'- gCUcCAGAucgcucUGCCGAG-UCGCcGACUGCg -3'
miRNA:   3'- -GAcGUCUu-----GCGGCUCaAGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 72005 0.7 0.827103
Target:  5'- -cGcCGGAGCucgaggaaGCCGAGgUCGCGcaGCCGCu -3'
miRNA:   3'- gaC-GUCUUG--------CGGCUCaAGCGC--UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 72146 0.7 0.810244
Target:  5'- -aGCGGua-GCCGAGUaCGCGcACaCGCg -3'
miRNA:   3'- gaCGUCuugCGGCUCAaGCGC-UG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 75200 0.67 0.943048
Target:  5'- -aGCAGAGa-CCGAG-UCGCGACaUGUc -3'
miRNA:   3'- gaCGUCUUgcGGCUCaAGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 76551 0.67 0.927659
Target:  5'- -cGCGGucgcGCGCCGGGUacucacccggccCGCcGCCGCg -3'
miRNA:   3'- gaCGUCu---UGCGGCUCAa-----------GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 80410 0.68 0.899564
Target:  5'- -cGCGGcccagguGGCGCCGGG--CGgGGCCGCc -3'
miRNA:   3'- gaCGUC-------UUGCGGCUCaaGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 80619 0.68 0.906345
Target:  5'- uCUGCcu-GCcgGCCGAGcaccUCGCGACCGg -3'
miRNA:   3'- -GACGucuUG--CGGCUCa---AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 82705 0.67 0.938489
Target:  5'- -cGCcGAgacGCGCCGAGgacgcCGCGccaccacucGCCGCg -3'
miRNA:   3'- gaCGuCU---UGCGGCUCaa---GCGC---------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 82846 0.72 0.717973
Target:  5'- -aGCGcGAGCG-CGAG--CGCGACCGCg -3'
miRNA:   3'- gaCGU-CUUGCgGCUCaaGCGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.