miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 84948 0.67 0.916287
Target:  5'- -cGCGGAGCGCCcccGGcaCGCGgauccuuggccccgGCCGCg -3'
miRNA:   3'- gaCGUCUUGCGGc--UCaaGCGC--------------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 86766 0.68 0.912273
Target:  5'- -gGUGGAuCGCCGGGaaCGaacCGGCCGCu -3'
miRNA:   3'- gaCGUCUuGCGGCUCaaGC---GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 88045 0.66 0.951489
Target:  5'- aUGCuaAGAcaguaaacgcGCGCgCGAGggggCGgGGCCGCg -3'
miRNA:   3'- gACG--UCU----------UGCG-GCUCaa--GCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 89977 0.67 0.943048
Target:  5'- -cGUGGuGCGCCGGcGUUCGaccgGugCGCa -3'
miRNA:   3'- gaCGUCuUGCGGCU-CAAGCg---CugGCG- -5'
10730 5' -55.5 NC_002794.1 + 90375 0.7 0.801578
Target:  5'- gUGCAGG--GCCGGGUcUCGCcGuCCGCg -3'
miRNA:   3'- gACGUCUugCGGCUCA-AGCG-CuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 90480 0.67 0.938489
Target:  5'- -gGCGGGGcCGCCGucccgCGCGAUCGg -3'
miRNA:   3'- gaCGUCUU-GCGGCucaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 90892 0.66 0.955377
Target:  5'- gUGUuccauAACGCCGAGgccaUCGUGucCCGCa -3'
miRNA:   3'- gACGuc---UUGCGGCUCa---AGCGCu-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 90946 0.69 0.843283
Target:  5'- -gGCGGGcuguGCGCCGAGgccCGgGcCCGCu -3'
miRNA:   3'- gaCGUCU----UGCGGCUCaa-GCgCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 91251 0.66 0.951489
Target:  5'- gCUGCGcucgcGGACGCCGuucGUggaccggCGCGGCCuGUa -3'
miRNA:   3'- -GACGU-----CUUGCGGCu--CAa------GCGCUGG-CG- -5'
10730 5' -55.5 NC_002794.1 + 91469 0.7 0.801578
Target:  5'- -aGCuG-ACGCCGGGcgagCGCGACCaGCu -3'
miRNA:   3'- gaCGuCuUGCGGCUCaa--GCGCUGG-CG- -5'
10730 5' -55.5 NC_002794.1 + 93027 0.71 0.756209
Target:  5'- -gGCGGAAC-CCG-GUgCGCGGCUGCc -3'
miRNA:   3'- gaCGUCUUGcGGCuCAaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 93721 0.68 0.887222
Target:  5'- cCUGCuGuuGCGCCGc--UCGCG-CCGCg -3'
miRNA:   3'- -GACGuCu-UGCGGCucaAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 93831 0.68 0.900192
Target:  5'- -gGCGGccauCGCCGAGaUCauggaCGGCCGCg -3'
miRNA:   3'- gaCGUCuu--GCGGCUCaAGc----GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 95491 0.68 0.911105
Target:  5'- uUGCGGAACgagcucgGCC-AGUaucucuaUgGCGACCGCg -3'
miRNA:   3'- gACGUCUUG-------CGGcUCA-------AgCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 95761 0.68 0.900192
Target:  5'- -cGCGGGGCGgCGGc--CGCGACgGCg -3'
miRNA:   3'- gaCGUCUUGCgGCUcaaGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 95819 0.67 0.923446
Target:  5'- -aGCGGcGGCgGCCGGGggaGCGGCgGCg -3'
miRNA:   3'- gaCGUC-UUG-CGGCUCaagCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 97865 0.7 0.810244
Target:  5'- -cGCGGAuugACGgCGAcGUUCGUcACCGCg -3'
miRNA:   3'- gaCGUCU---UGCgGCU-CAAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 99425 0.67 0.938489
Target:  5'- -aGCAGggU-CCGGGUUUGUugGACCGg -3'
miRNA:   3'- gaCGUCuuGcGGCUCAAGCG--CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 99580 0.72 0.727659
Target:  5'- -aGgGGggUGCgGAGggCGCGGCgGCg -3'
miRNA:   3'- gaCgUCuuGCGgCUCaaGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 99694 0.69 0.872675
Target:  5'- aCUGCGcgcuGGCGCCGcGGauguucuUUCGCGACCGg -3'
miRNA:   3'- -GACGUc---UUGCGGC-UC-------AAGCGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.