miRNA display CGI


Results 101 - 120 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 100371 0.69 0.851101
Target:  5'- aCUGCgAGGugGCCGAcguccgcggcGUggacgacguggCGUGGCCGCu -3'
miRNA:   3'- -GACG-UCUugCGGCU----------CAa----------GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 100679 0.75 0.568825
Target:  5'- -cGCuacGCGcCCGAGUUCGUGACCGg -3'
miRNA:   3'- gaCGucuUGC-GGCUCAAGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 100774 0.82 0.252341
Target:  5'- -cGCGGAguacacGCGCCugcGGUUCGCGGCCGCu -3'
miRNA:   3'- gaCGUCU------UGCGGc--UCAAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 101430 0.68 0.906345
Target:  5'- gCUGCgcgacgauccgGGGACGCCGg---CGCGcCCGCc -3'
miRNA:   3'- -GACG-----------UCUUGCGGCucaaGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 101571 0.67 0.943048
Target:  5'- -gGCGGGAgUGCCGGccgcCGCGGCCGg -3'
miRNA:   3'- gaCGUCUU-GCGGCUcaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 102156 0.71 0.765527
Target:  5'- -gGCGGcgugcGCGCCGGGgccaUCGUGGCgCGCg -3'
miRNA:   3'- gaCGUCu----UGCGGCUCa---AGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 102416 0.66 0.951489
Target:  5'- -cGCGGccGugGCCGAGgcCGCcACgCGCa -3'
miRNA:   3'- gaCGUC--UugCGGCUCaaGCGcUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 103909 0.68 0.90268
Target:  5'- -gGCgAGAACGCCGcgcaacgcggcgagcAGcgcgCGUGGCCGCc -3'
miRNA:   3'- gaCG-UCUUGCGGC---------------UCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 106229 0.7 0.792765
Target:  5'- -cGCGGccGCGCuCGGG-UCGCaGACCGCc -3'
miRNA:   3'- gaCGUCu-UGCG-GCUCaAGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 106264 0.7 0.827103
Target:  5'- -gGC-GAGCGCCGcGcgUCGCG-CCGCc -3'
miRNA:   3'- gaCGuCUUGCGGCuCa-AGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 106359 0.68 0.887222
Target:  5'- -gGCGGGcggGCGCCG-GUUCGCgcggagggcaGACgGCg -3'
miRNA:   3'- gaCGUCU---UGCGGCuCAAGCG----------CUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 107536 0.7 0.827103
Target:  5'- -gGCGcGGCGCCGGcggCGaCGACCGCg -3'
miRNA:   3'- gaCGUcUUGCGGCUcaaGC-GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 107878 0.66 0.94738
Target:  5'- -cGCGGAggcgGCGCgGcGggUGCGGCUGCc -3'
miRNA:   3'- gaCGUCU----UGCGgCuCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 108155 0.67 0.923446
Target:  5'- -cGCcgGGAGCGCCGg---CGCGaagacGCCGCg -3'
miRNA:   3'- gaCG--UCUUGCGGCucaaGCGC-----UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 110614 0.66 0.955377
Target:  5'- -aGCGGAGCgggaGCCGcGgcgcCGCGGCgGCg -3'
miRNA:   3'- gaCGUCUUG----CGGCuCaa--GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 111312 0.69 0.880411
Target:  5'- -cGaCGGAGaCGCCGGGccagcggCGCGgGCCGCa -3'
miRNA:   3'- gaC-GUCUU-GCGGCUCaa-----GCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 111620 0.7 0.822114
Target:  5'- -gGCGGGGCcGCCGcggccgccgccggucGGgcgcCGCGGCCGCg -3'
miRNA:   3'- gaCGUCUUG-CGGC---------------UCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 111836 0.7 0.792765
Target:  5'- -cGCGGAACGucugcCCGAGagccgUCGCcACCGCc -3'
miRNA:   3'- gaCGUCUUGC-----GGCUCa----AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 112736 0.66 0.955377
Target:  5'- -cGCGGAAgGCgCG-GUgcucCGCGGCgGCg -3'
miRNA:   3'- gaCGUCUUgCG-GCuCAa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 112822 0.68 0.912853
Target:  5'- uCUGCucGGcCGCCGAGUacggcugcucgucggCGCG-CCGCa -3'
miRNA:   3'- -GACGu-CUuGCGGCUCAa--------------GCGCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.