miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 194911 0.67 0.933704
Target:  5'- gUGCu---CGCCGAcagcaGCGGCCGCa -3'
miRNA:   3'- gACGucuuGCGGCUcaag-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194393 0.67 0.928689
Target:  5'- -aGCu--GCGCCGcccggucGUUCGCGuCCGCc -3'
miRNA:   3'- gaCGucuUGCGGCu------CAAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194113 0.71 0.765527
Target:  5'- gCUGCGGcACcgcgcgcacgGCUGAGgcaGCGGCCGCa -3'
miRNA:   3'- -GACGUCuUG----------CGGCUCaagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 194062 0.69 0.851101
Target:  5'- -cGCcgAGAGCGCCGccUUCGUcGCCGCc -3'
miRNA:   3'- gaCG--UCUUGCGGCucAAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 193281 0.66 0.951489
Target:  5'- -aGCGGcguGCGCCGGuagUCGCcGuCCGCu -3'
miRNA:   3'- gaCGUCu--UGCGGCUca-AGCG-CuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 192458 0.67 0.932223
Target:  5'- -cGCAGucgcgcgccaccAGCGCCGAGcccUCGUccgccucgucccacGGCCGCg -3'
miRNA:   3'- gaCGUC------------UUGCGGCUCa--AGCG--------------CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 192382 0.67 0.935645
Target:  5'- -cGCGGGcugaccgccaccgccGCGCCGGGguagUCGaaacGCCGCg -3'
miRNA:   3'- gaCGUCU---------------UGCGGCUCa---AGCgc--UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 190988 0.66 0.955377
Target:  5'- -gGCAGcGCGgCGAcGgcgUCGCGAUCGg -3'
miRNA:   3'- gaCGUCuUGCgGCU-Ca--AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 189901 0.68 0.900192
Target:  5'- -cGCcgucAGCGCCGccg-CGCGACCGCc -3'
miRNA:   3'- gaCGuc--UUGCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 189856 0.66 0.955377
Target:  5'- -cGCGGAGcCGUCGGcgUCGUcGCCGCc -3'
miRNA:   3'- gaCGUCUU-GCGGCUcaAGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 188287 0.68 0.887222
Target:  5'- aUGCAGGGCGCCG----CGCG-CCGg -3'
miRNA:   3'- gACGUCUUGCGGCucaaGCGCuGGCg -5'
10730 5' -55.5 NC_002794.1 + 187902 0.66 0.958331
Target:  5'- -cGCGGugccgcucgccCGCCGGGccccgcCGCGACCGUc -3'
miRNA:   3'- gaCGUCuu---------GCGGCUCaa----GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 187523 0.69 0.851101
Target:  5'- -cGCGGAGgaacucccCGCCGc---CGCGACCGCc -3'
miRNA:   3'- gaCGUCUU--------GCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 185935 0.67 0.943048
Target:  5'- -gGCcaccCGCCaGGcUCGCGGCCGCg -3'
miRNA:   3'- gaCGucuuGCGGcUCaAGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 185460 0.68 0.893817
Target:  5'- -cGCGacaAACGCCGcGggCgGCGGCCGCg -3'
miRNA:   3'- gaCGUc--UUGCGGCuCaaG-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 185210 0.67 0.917973
Target:  5'- -cGCGGcucGCGCCgcggaGAGUcgCGcCGACCGCc -3'
miRNA:   3'- gaCGUCu--UGCGG-----CUCAa-GC-GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 184948 0.68 0.900192
Target:  5'- -cGCAGcuGCGCCGGcccgCGCaGCCGCu -3'
miRNA:   3'- gaCGUCu-UGCGGCUcaa-GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 184579 0.68 0.893817
Target:  5'- -cGCGGcGGCGgCGGccacgCGCGGCCGCg -3'
miRNA:   3'- gaCGUC-UUGCgGCUcaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 184432 0.66 0.946104
Target:  5'- gUGCAGAcuguacaucugagcGCGCCGcugccgccCGCGgGCCGCg -3'
miRNA:   3'- gACGUCU--------------UGCGGCucaa----GCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 184043 0.66 0.955377
Target:  5'- -cGCAGcGCGCgG---UCGCGgGCCGCg -3'
miRNA:   3'- gaCGUCuUGCGgCucaAGCGC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.