miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 150213 0.66 0.955377
Target:  5'- -aGCGGcuGCuGCCGAGcugcgUGCGACgGCa -3'
miRNA:   3'- gaCGUCu-UG-CGGCUCaa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 149649 0.68 0.903911
Target:  5'- aUGCGGuuCGCCGAGgaggccgagcgggggCGCGucgcgcucgacugGCCGCg -3'
miRNA:   3'- gACGUCuuGCGGCUCaa-------------GCGC-------------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 148620 0.69 0.866159
Target:  5'- cCUGCAGAu--CUGGGUcuccgaUCGCGGCgGCg -3'
miRNA:   3'- -GACGUCUugcGGCUCA------AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 148136 0.7 0.818755
Target:  5'- -cGCGGGGcCGCCGGGgcgagggcggUCGCGACgGa -3'
miRNA:   3'- gaCGUCUU-GCGGCUCa---------AGCGCUGgCg -5'
10730 5' -55.5 NC_002794.1 + 147260 0.69 0.880411
Target:  5'- -gGCAG-ACGCuCGAGcugcCGUGGCCGUc -3'
miRNA:   3'- gaCGUCuUGCG-GCUCaa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 146508 0.67 0.943048
Target:  5'- -cGCGGAGC-CCcuGcUCGgGACCGCg -3'
miRNA:   3'- gaCGUCUUGcGGcuCaAGCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 145940 0.66 0.955377
Target:  5'- -gGCgAGAGCGguUCGGGagUCGCGAgCGCc -3'
miRNA:   3'- gaCG-UCUUGC--GGCUCa-AGCGCUgGCG- -5'
10730 5' -55.5 NC_002794.1 + 145854 0.71 0.774731
Target:  5'- -cGCucgacGAGcCGCCGAGggcCGCGACCGg -3'
miRNA:   3'- gaCGu----CUU-GCGGCUCaa-GCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 145570 0.69 0.858728
Target:  5'- -cGCGGAcgaGCGCCGAcGga-GCGGCgGCc -3'
miRNA:   3'- gaCGUCU---UGCGGCU-CaagCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 144886 0.66 0.962507
Target:  5'- gUGCGGGGCGagaCGc--UCGCG-CCGCu -3'
miRNA:   3'- gACGUCUUGCg--GCucaAGCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 144430 0.72 0.708217
Target:  5'- cCUGCu--GCGCCGAGUgcaGCcGugCGCg -3'
miRNA:   3'- -GACGucuUGCGGCUCAag-CG-CugGCG- -5'
10730 5' -55.5 NC_002794.1 + 143162 0.66 0.962507
Target:  5'- -cGCGGugaAGCGCCaGAGcUUGCGGCgGUu -3'
miRNA:   3'- gaCGUC---UUGCGG-CUCaAGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 143042 0.69 0.878326
Target:  5'- gUGCAGGGcCGCCaGGUUgaggccguagcgccCGCGGCgGCa -3'
miRNA:   3'- gACGUCUU-GCGGcUCAA--------------GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 142939 0.72 0.717973
Target:  5'- -aGCAGGugGCCGAGgggaaGuCGGCgGCg -3'
miRNA:   3'- gaCGUCUugCGGCUCaag--C-GCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 141634 0.7 0.792765
Target:  5'- -aGCgacgGGAAgGCCGGcGUggcCGCGGCCGCc -3'
miRNA:   3'- gaCG----UCUUgCGGCU-CAa--GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 141532 0.66 0.955377
Target:  5'- -gGCGGGcugcuCGCCGAaggCGCGAauCCGCc -3'
miRNA:   3'- gaCGUCUu----GCGGCUcaaGCGCU--GGCG- -5'
10730 5' -55.5 NC_002794.1 + 141433 0.67 0.923446
Target:  5'- -gGCgGGGGCGCCGGGggCGcCGGgaGCg -3'
miRNA:   3'- gaCG-UCUUGCGGCUCaaGC-GCUggCG- -5'
10730 5' -55.5 NC_002794.1 + 141081 0.66 0.962507
Target:  5'- -cGCGGAGauCGUCGAGcaacuggCGCGACgGUc -3'
miRNA:   3'- gaCGUCUU--GCGGCUCaa-----GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 139996 0.67 0.943048
Target:  5'- -cGCGGGACGgugCGGGUggaggcCGCGgagGCCGCg -3'
miRNA:   3'- gaCGUCUUGCg--GCUCAa-----GCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 139429 0.66 0.961491
Target:  5'- aUGCAGGucucguguccgcgcGCGCCGAucGgcaggUCGuCGugCGCc -3'
miRNA:   3'- gACGUCU--------------UGCGGCU--Ca----AGC-GCugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.