miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 139246 0.7 0.810244
Target:  5'- -aGCAGGAUGCagaugaacaUGAGcgUGCGACUGCg -3'
miRNA:   3'- gaCGUCUUGCG---------GCUCaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 138392 0.77 0.437036
Target:  5'- gCUGcCAGAagGCGUCGAGgucgUCGCcGGCCGCc -3'
miRNA:   3'- -GAC-GUCU--UGCGGCUCa---AGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 137954 0.66 0.951489
Target:  5'- -gGCGGAugcguuCGCCGAGgcccugggagUUGUcGCCGCa -3'
miRNA:   3'- gaCGUCUu-----GCGGCUCa---------AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 137646 0.66 0.962507
Target:  5'- -gGCGG-GCGCCGGGccUCcgGCG-CCGCu -3'
miRNA:   3'- gaCGUCuUGCGGCUCa-AG--CGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 137593 0.71 0.774731
Target:  5'- gUGCGGGGagccgcCGCCGGcggUCGCGGCgGCg -3'
miRNA:   3'- gACGUCUU------GCGGCUca-AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 134200 0.7 0.801578
Target:  5'- gCUGguGGGgGCCGucGGUcgccaaGCGACCGCc -3'
miRNA:   3'- -GACguCUUgCGGC--UCAag----CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 133149 0.67 0.943048
Target:  5'- gUGCgAGAucuGCGCCGAcgaCGUGACuCGCu -3'
miRNA:   3'- gACG-UCU---UGCGGCUcaaGCGCUG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 131194 0.67 0.943048
Target:  5'- -aGCAcGGCGCCGGGgcggCGCcgguguacauGACCGUc -3'
miRNA:   3'- gaCGUcUUGCGGCUCaa--GCG----------CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 129047 0.66 0.955377
Target:  5'- uCUGCGGucguGGCGCgCGAcGgugugUCGCGGCUGg -3'
miRNA:   3'- -GACGUC----UUGCG-GCU-Ca----AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 127598 0.66 0.959049
Target:  5'- uCUGCGcGGcCGCUGAGcggCGCgGACCGg -3'
miRNA:   3'- -GACGU-CUuGCGGCUCaa-GCG-CUGGCg -5'
10730 5' -55.5 NC_002794.1 + 127338 0.67 0.943048
Target:  5'- -aGCGccGCuGCCGAGacgcUCGCGGCgGCg -3'
miRNA:   3'- gaCGUcuUG-CGGCUCa---AGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 127183 0.67 0.928689
Target:  5'- -cGCAGu-CGUCGc---CGCGGCCGCa -3'
miRNA:   3'- gaCGUCuuGCGGCucaaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 126596 0.66 0.957606
Target:  5'- -gGaCuGAGCGCCGAGgccggcgccgacgUCGCGGCgugaGCg -3'
miRNA:   3'- gaC-GuCUUGCGGCUCa------------AGCGCUGg---CG- -5'
10730 5' -55.5 NC_002794.1 + 126375 0.81 0.276952
Target:  5'- gCUGCGuGGGCGCCGGGgccugCGCGGCgGCg -3'
miRNA:   3'- -GACGU-CUUGCGGCUCaa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 126318 0.66 0.94738
Target:  5'- -aGCGGAGCGugacCCGc--UCGCuGACCGCc -3'
miRNA:   3'- gaCGUCUUGC----GGCucaAGCG-CUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 125929 0.67 0.923446
Target:  5'- gCUGCu---CGUCGAGcaguuccUCGUGGCCGCc -3'
miRNA:   3'- -GACGucuuGCGGCUCa------AGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 122903 0.89 0.095641
Target:  5'- -cGCAcGGGCGCCGAGUUCGCGACgGUg -3'
miRNA:   3'- gaCGU-CUUGCGGCUCAAGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 121974 0.69 0.880411
Target:  5'- gUGCGGcucgguccCGCCGAG--CGCGGCCGg -3'
miRNA:   3'- gACGUCuu------GCGGCUCaaGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 121644 0.66 0.951489
Target:  5'- -gGgAGAACGCCGucgccGUaaCGCGACgGCc -3'
miRNA:   3'- gaCgUCUUGCGGCu----CAa-GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 121398 0.8 0.310363
Target:  5'- -cGCGGccGGCGCCGGGacCGCGACCGUc -3'
miRNA:   3'- gaCGUC--UUGCGGCUCaaGCGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.