miRNA display CGI


Results 81 - 100 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 120447 0.66 0.94905
Target:  5'- -cGUGGAACGCCGcGUcggccuggcucgauuUCGCGcggccCCGCc -3'
miRNA:   3'- gaCGUCUUGCGGCuCA---------------AGCGCu----GGCG- -5'
10730 5' -55.5 NC_002794.1 + 120101 0.66 0.955377
Target:  5'- gUGCcGAgcGCGCCGcgcGUgacgcgCGCGACgGCg -3'
miRNA:   3'- gACGuCU--UGCGGCu--CAa-----GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 120032 0.66 0.951088
Target:  5'- -cGCGGgGACGUCGucaugacggcggcGGUg-GCGGCCGCg -3'
miRNA:   3'- gaCGUC-UUGCGGC-------------UCAagCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 119519 0.66 0.951489
Target:  5'- -cGCGGAGCcgGCCGcggaccccucGUcCGCGGCCGUc -3'
miRNA:   3'- gaCGUCUUG--CGGCu---------CAaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 118882 0.69 0.858728
Target:  5'- gCUGCAGGucgGC-CCGGuGUUCGCGuagguCCGUg -3'
miRNA:   3'- -GACGUCU---UGcGGCU-CAAGCGCu----GGCG- -5'
10730 5' -55.5 NC_002794.1 + 118272 0.69 0.843283
Target:  5'- -gGCGGcGGCGCCGGcgUCGgGgACCGCg -3'
miRNA:   3'- gaCGUC-UUGCGGCUcaAGCgC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 118179 0.66 0.955377
Target:  5'- -gGCGGcgacGCGCCGAccuuccgUCGCcGCCGCc -3'
miRNA:   3'- gaCGUCu---UGCGGCUca-----AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 117628 0.7 0.792765
Target:  5'- -cGaCAGGGCGCCGAccgCGCGGCCcCg -3'
miRNA:   3'- gaC-GUCUUGCGGCUcaaGCGCUGGcG- -5'
10730 5' -55.5 NC_002794.1 + 117423 0.67 0.930723
Target:  5'- gCUGCAGGAgcUGCCgcGAGgcgUUGCGgaugucgcggaagacGCCGCg -3'
miRNA:   3'- -GACGUCUU--GCGG--CUCa--AGCGC---------------UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 117194 0.67 0.938489
Target:  5'- -cGCAGAucgGCGUCGGGcccgggCGgcucCGGCCGCg -3'
miRNA:   3'- gaCGUCU---UGCGGCUCaa----GC----GCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 116730 0.66 0.95797
Target:  5'- gUGCcGAGCguguuggcgacgccGCCGAGgaagGCGGCUGCa -3'
miRNA:   3'- gACGuCUUG--------------CGGCUCaag-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 116493 0.66 0.962507
Target:  5'- -cGCAGAaagucguagAUGCCGAGgcaggCGUaGCCGUc -3'
miRNA:   3'- gaCGUCU---------UGCGGCUCaa---GCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 116076 0.66 0.951489
Target:  5'- -cGCGGAGCGCuCGg---CGCGGCgGUc -3'
miRNA:   3'- gaCGUCUUGCG-GCucaaGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 115896 0.67 0.933213
Target:  5'- -cGCGGAGCGCgggGGGUUCGUGggguggacuuggcGCgGCg -3'
miRNA:   3'- gaCGUCUUGCGg--CUCAAGCGC-------------UGgCG- -5'
10730 5' -55.5 NC_002794.1 + 115060 0.7 0.835282
Target:  5'- -gGCGGcAGCGCCGuccAGUccacggccUCgGCGGCCGCc -3'
miRNA:   3'- gaCGUC-UUGCGGC---UCA--------AG-CGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 114639 0.66 0.946957
Target:  5'- -cGCGGAGCucgagcuGCCGGugcuGUUCGCG-CgCGCg -3'
miRNA:   3'- gaCGUCUUG-------CGGCU----CAAGCGCuG-GCG- -5'
10730 5' -55.5 NC_002794.1 + 113907 0.67 0.930723
Target:  5'- uCUGCAGGaaggccuccaggucgGcCGCCGAGgcgaCG-GGCCGCu -3'
miRNA:   3'- -GACGUCU---------------U-GCGGCUCaa--GCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 113587 0.7 0.827103
Target:  5'- cCUGCAcGAcgGCGCgGAGUUUcuccaGCG-CCGCg -3'
miRNA:   3'- -GACGU-CU--UGCGgCUCAAG-----CGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 112822 0.68 0.912853
Target:  5'- uCUGCucGGcCGCCGAGUacggcugcucgucggCGCG-CCGCa -3'
miRNA:   3'- -GACGu-CUuGCGGCUCAa--------------GCGCuGGCG- -5'
10730 5' -55.5 NC_002794.1 + 112736 0.66 0.955377
Target:  5'- -cGCGGAAgGCgCG-GUgcucCGCGGCgGCg -3'
miRNA:   3'- gaCGUCUUgCG-GCuCAa---GCGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.