miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10730 5' -55.5 NC_002794.1 + 300 0.66 0.95797
Target:  5'- -cGCcGAACGCCGGGcccgccccacccccaCGCGcgcGCCGCc -3'
miRNA:   3'- gaCGuCUUGCGGCUCaa-------------GCGC---UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 187902 0.66 0.958331
Target:  5'- -cGCGGugccgcucgccCGCCGGGccccgcCGCGACCGUc -3'
miRNA:   3'- gaCGUCuu---------GCGGCUCaa----GCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 129047 0.66 0.955377
Target:  5'- uCUGCGGucguGGCGCgCGAcGgugugUCGCGGCUGg -3'
miRNA:   3'- -GACGUC----UUGCG-GCU-Ca----AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 90892 0.66 0.955377
Target:  5'- gUGUuccauAACGCCGAGgccaUCGUGucCCGCa -3'
miRNA:   3'- gACGuc---UUGCGGCUCa---AGCGCu-GGCG- -5'
10730 5' -55.5 NC_002794.1 + 118179 0.66 0.955377
Target:  5'- -gGCGGcgacGCGCCGAccuuccgUCGCcGCCGCc -3'
miRNA:   3'- gaCGUCu---UGCGGCUca-----AGCGcUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 44313 0.66 0.955377
Target:  5'- -cGgGGAGCGaCCGcGagCGCGGCgGCg -3'
miRNA:   3'- gaCgUCUUGC-GGCuCaaGCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 63162 0.66 0.955377
Target:  5'- gCUGCuGcACgGCCGAGgcCGCGAagcggUCGCg -3'
miRNA:   3'- -GACGuCuUG-CGGCUCaaGCGCU-----GGCG- -5'
10730 5' -55.5 NC_002794.1 + 119519 0.66 0.951489
Target:  5'- -cGCGGAGCcgGCCGcggaccccucGUcCGCGGCCGUc -3'
miRNA:   3'- gaCGUCUUG--CGGCu---------CAaGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 110614 0.66 0.955377
Target:  5'- -aGCGGAGCgggaGCCGcGgcgcCGCGGCgGCg -3'
miRNA:   3'- gaCGUCUUG----CGGCuCaa--GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 88045 0.66 0.951489
Target:  5'- aUGCuaAGAcaguaaacgcGCGCgCGAGggggCGgGGCCGCg -3'
miRNA:   3'- gACG--UCU----------UGCG-GCUCaa--GCgCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 141532 0.66 0.955377
Target:  5'- -gGCGGGcugcuCGCCGAaggCGCGAauCCGCc -3'
miRNA:   3'- gaCGUCUu----GCGGCUcaaGCGCU--GGCG- -5'
10730 5' -55.5 NC_002794.1 + 145940 0.66 0.955377
Target:  5'- -gGCgAGAGCGguUCGGGagUCGCGAgCGCc -3'
miRNA:   3'- gaCG-UCUUGC--GGCUCa-AGCGCUgGCG- -5'
10730 5' -55.5 NC_002794.1 + 126596 0.66 0.957606
Target:  5'- -gGaCuGAGCGCCGAGgccggcgccgacgUCGCGGCgugaGCg -3'
miRNA:   3'- gaC-GuCUUGCGGCUCa------------AGCGCUGg---CG- -5'
10730 5' -55.5 NC_002794.1 + 183498 0.66 0.955377
Target:  5'- -cGCGcGAACccggccCCGAGacccaugUCGCGGCCGUg -3'
miRNA:   3'- gaCGU-CUUGc-----GGCUCa------AGCGCUGGCG- -5'
10730 5' -55.5 NC_002794.1 + 190988 0.66 0.955377
Target:  5'- -gGCAGcGCGgCGAcGgcgUCGCGAUCGg -3'
miRNA:   3'- gaCGUCuUGCgGCU-Ca--AGCGCUGGCg -5'
10730 5' -55.5 NC_002794.1 + 112736 0.66 0.955377
Target:  5'- -cGCGGAAgGCgCG-GUgcucCGCGGCgGCg -3'
miRNA:   3'- gaCGUCUUgCG-GCuCAa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 120101 0.66 0.955377
Target:  5'- gUGCcGAgcGCGCCGcgcGUgacgcgCGCGACgGCg -3'
miRNA:   3'- gACGuCU--UGCGGCu--CAa-----GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 150213 0.66 0.955377
Target:  5'- -aGCGGcuGCuGCCGAGcugcgUGCGACgGCa -3'
miRNA:   3'- gaCGUCu-UG-CGGCUCaa---GCGCUGgCG- -5'
10730 5' -55.5 NC_002794.1 + 184043 0.66 0.955377
Target:  5'- -cGCAGcGCGCgG---UCGCGgGCCGCg -3'
miRNA:   3'- gaCGUCuUGCGgCucaAGCGC-UGGCG- -5'
10730 5' -55.5 NC_002794.1 + 189856 0.66 0.955377
Target:  5'- -cGCGGAGcCGUCGGcgUCGUcGCCGCc -3'
miRNA:   3'- gaCGUCUU-GCGGCUcaAGCGcUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.