Results 81 - 100 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10730 | 5' | -55.5 | NC_002794.1 | + | 116076 | 0.66 | 0.951489 |
Target: 5'- -cGCGGAGCGCuCGg---CGCGGCgGUc -3' miRNA: 3'- gaCGUCUUGCG-GCucaaGCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 102416 | 0.66 | 0.951489 |
Target: 5'- -cGCGGccGugGCCGAGgcCGCcACgCGCa -3' miRNA: 3'- gaCGUC--UugCGGCUCaaGCGcUG-GCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 20982 | 0.66 | 0.951489 |
Target: 5'- -gGCAGcGGCGgCGGca--GCGACCGCg -3' miRNA: 3'- gaCGUC-UUGCgGCUcaagCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 91251 | 0.66 | 0.951489 |
Target: 5'- gCUGCGcucgcGGACGCCGuucGUggaccggCGCGGCCuGUa -3' miRNA: 3'- -GACGU-----CUUGCGGCu--CAa------GCGCUGG-CG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 120032 | 0.66 | 0.951088 |
Target: 5'- -cGCGGgGACGUCGucaugacggcggcGGUg-GCGGCCGCg -3' miRNA: 3'- gaCGUC-UUGCGGC-------------UCAagCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 150332 | 0.66 | 0.951088 |
Target: 5'- gUGCAGugGACGCaCGGcuGUcugcucgUCGCGGCCGa -3' miRNA: 3'- gACGUC--UUGCG-GCU--CA-------AGCGCUGGCg -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 178313 | 0.66 | 0.95028 |
Target: 5'- -gGC-GAACGCCGAaccUCGUagagccgcucugguGACCGCg -3' miRNA: 3'- gaCGuCUUGCGGCUca-AGCG--------------CUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 88045 | 0.66 | 0.951489 |
Target: 5'- aUGCuaAGAcaguaaacgcGCGCgCGAGggggCGgGGCCGCg -3' miRNA: 3'- gACG--UCU----------UGCG-GCUCaa--GCgCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 110614 | 0.66 | 0.955377 |
Target: 5'- -aGCGGAGCgggaGCCGcGgcgcCGCGGCgGCg -3' miRNA: 3'- gaCGUCUUG----CGGCuCaa--GCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 119519 | 0.66 | 0.951489 |
Target: 5'- -cGCGGAGCcgGCCGcggaccccucGUcCGCGGCCGUc -3' miRNA: 3'- gaCGUCUUG--CGGCu---------CAaGCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 150213 | 0.66 | 0.955377 |
Target: 5'- -aGCGGcuGCuGCCGAGcugcgUGCGACgGCa -3' miRNA: 3'- gaCGUCu-UG-CGGCUCaa---GCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 184043 | 0.66 | 0.955377 |
Target: 5'- -cGCAGcGCGCgG---UCGCGgGCCGCg -3' miRNA: 3'- gaCGUCuUGCGgCucaAGCGC-UGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 189856 | 0.66 | 0.955377 |
Target: 5'- -cGCGGAGcCGUCGGcgUCGUcGCCGCc -3' miRNA: 3'- gaCGUCUU-GCGGCUcaAGCGcUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 145940 | 0.66 | 0.955377 |
Target: 5'- -gGCgAGAGCGguUCGGGagUCGCGAgCGCc -3' miRNA: 3'- gaCG-UCUUGC--GGCUCa-AGCGCUgGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 141532 | 0.66 | 0.955377 |
Target: 5'- -gGCGGGcugcuCGCCGAaggCGCGAauCCGCc -3' miRNA: 3'- gaCGUCUu----GCGGCUcaaGCGCU--GGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 129047 | 0.66 | 0.955377 |
Target: 5'- uCUGCGGucguGGCGCgCGAcGgugugUCGCGGCUGg -3' miRNA: 3'- -GACGUC----UUGCG-GCU-Ca----AGCGCUGGCg -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 90892 | 0.66 | 0.955377 |
Target: 5'- gUGUuccauAACGCCGAGgccaUCGUGucCCGCa -3' miRNA: 3'- gACGuc---UUGCGGCUCa---AGCGCu-GGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 118179 | 0.66 | 0.955377 |
Target: 5'- -gGCGGcgacGCGCCGAccuuccgUCGCcGCCGCc -3' miRNA: 3'- gaCGUCu---UGCGGCUca-----AGCGcUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 44313 | 0.66 | 0.955377 |
Target: 5'- -cGgGGAGCGaCCGcGagCGCGGCgGCg -3' miRNA: 3'- gaCgUCUUGC-GGCuCaaGCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 63162 | 0.66 | 0.955377 |
Target: 5'- gCUGCuGcACgGCCGAGgcCGCGAagcggUCGCg -3' miRNA: 3'- -GACGuCuUG-CGGCUCaaGCGCU-----GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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