Results 41 - 60 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10730 | 5' | -55.5 | NC_002794.1 | + | 182938 | 0.66 | 0.962507 |
Target: 5'- -aGUAGuccgGCGCCGGGcUCGagcCGACgGCg -3' miRNA: 3'- gaCGUCu---UGCGGCUCaAGC---GCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 116493 | 0.66 | 0.962507 |
Target: 5'- -cGCAGAaagucguagAUGCCGAGgcaggCGUaGCCGUc -3' miRNA: 3'- gaCGUCU---------UGCGGCUCaa---GCGcUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 143162 | 0.66 | 0.962507 |
Target: 5'- -cGCGGugaAGCGCCaGAGcUUGCGGCgGUu -3' miRNA: 3'- gaCGUC---UUGCGG-CUCaAGCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 141081 | 0.66 | 0.962507 |
Target: 5'- -cGCGGAGauCGUCGAGcaacuggCGCGACgGUc -3' miRNA: 3'- gaCGUCUU--GCGGCUCaa-----GCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 64815 | 0.65 | 0.964157 |
Target: 5'- -cGCGGAcggcggcgagccgGCGCCGAcgaccggacggCGCGGCgGCa -3' miRNA: 3'- gaCGUCU-------------UGCGGCUcaa--------GCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 127598 | 0.66 | 0.959049 |
Target: 5'- uCUGCGcGGcCGCUGAGcggCGCgGACCGg -3' miRNA: 3'- -GACGU-CUuGCGGCUCaa-GCG-CUGGCg -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 14589 | 0.66 | 0.959049 |
Target: 5'- -aGCGGGccguggcgagcGCGCCGGGcacCGCGACgGg -3' miRNA: 3'- gaCGUCU-----------UGCGGCUCaa-GCGCUGgCg -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 189856 | 0.66 | 0.955377 |
Target: 5'- -cGCGGAGcCGUCGGcgUCGUcGCCGCc -3' miRNA: 3'- gaCGUCUU-GCGGCUcaAGCGcUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 184043 | 0.66 | 0.955377 |
Target: 5'- -cGCAGcGCGCgG---UCGCGgGCCGCg -3' miRNA: 3'- gaCGUCuUGCGgCucaAGCGC-UGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 150213 | 0.66 | 0.955377 |
Target: 5'- -aGCGGcuGCuGCCGAGcugcgUGCGACgGCa -3' miRNA: 3'- gaCGUCu-UG-CGGCUCaa---GCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 120101 | 0.66 | 0.955377 |
Target: 5'- gUGCcGAgcGCGCCGcgcGUgacgcgCGCGACgGCg -3' miRNA: 3'- gACGuCU--UGCGGCu--CAa-----GCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 112736 | 0.66 | 0.955377 |
Target: 5'- -cGCGGAAgGCgCG-GUgcucCGCGGCgGCg -3' miRNA: 3'- gaCGUCUUgCG-GCuCAa---GCGCUGgCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 190988 | 0.66 | 0.955377 |
Target: 5'- -gGCAGcGCGgCGAcGgcgUCGCGAUCGg -3' miRNA: 3'- gaCGUCuUGCgGCU-Ca--AGCGCUGGCg -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 183498 | 0.66 | 0.955377 |
Target: 5'- -cGCGcGAACccggccCCGAGacccaugUCGCGGCCGUg -3' miRNA: 3'- gaCGU-CUUGc-----GGCUCa------AGCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 126596 | 0.66 | 0.957606 |
Target: 5'- -gGaCuGAGCGCCGAGgccggcgccgacgUCGCGGCgugaGCg -3' miRNA: 3'- gaC-GuCUUGCGGCUCa------------AGCGCUGg---CG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 187902 | 0.66 | 0.958331 |
Target: 5'- -cGCGGugccgcucgccCGCCGGGccccgcCGCGACCGUc -3' miRNA: 3'- gaCGUCuu---------GCGGCUCaa----GCGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 300 | 0.66 | 0.95797 |
Target: 5'- -cGCcGAACGCCGGGcccgccccacccccaCGCGcgcGCCGCc -3' miRNA: 3'- gaCGuCUUGCGGCUCaa-------------GCGC---UGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 116730 | 0.66 | 0.95797 |
Target: 5'- gUGCcGAGCguguuggcgacgccGCCGAGgaagGCGGCUGCa -3' miRNA: 3'- gACGuCUUG--------------CGGCUCaag-CGCUGGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 33147 | 0.66 | 0.959049 |
Target: 5'- gCUGCGGGAC-CCGAc--CGUGuuCCGCa -3' miRNA: 3'- -GACGUCUUGcGGCUcaaGCGCu-GGCG- -5' |
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10730 | 5' | -55.5 | NC_002794.1 | + | 55165 | 0.66 | 0.959049 |
Target: 5'- -aGUcGAGCGCCGAGcggGCGACUcgagGCg -3' miRNA: 3'- gaCGuCUUGCGGCUCaagCGCUGG----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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