miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 48860 0.65 0.999367
Target:  5'- gGGCgcgauaguccccgUCGGCGGCCagGUggcaGGCCAGCGu -3'
miRNA:   3'- -CCGa------------AGCUGCUGGagUAg---UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 83697 0.66 0.999283
Target:  5'- uGCgaCGACGGCCUCugcCAGauCCGACu -3'
miRNA:   3'- cCGaaGCUGCUGGAGua-GUU--GGUUGu -5'
10731 3' -49.9 NC_002794.1 + 35773 0.66 0.999283
Target:  5'- cGGCaccgUCGcCGGCgUCGUCu-CCGGCGu -3'
miRNA:   3'- -CCGa---AGCuGCUGgAGUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 33878 0.66 0.999283
Target:  5'- aGCggaUCGugGAgCUCAUgGAgCGGCAc -3'
miRNA:   3'- cCGa--AGCugCUgGAGUAgUUgGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 150845 0.66 0.999283
Target:  5'- aGCUccagCGGCGGCCgCGUCuacgccuauAGCCGGCGc -3'
miRNA:   3'- cCGAa---GCUGCUGGaGUAG---------UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 193747 0.66 0.999283
Target:  5'- cGGCUUCGGCGAgCga--CcGCCGGCc -3'
miRNA:   3'- -CCGAAGCUGCUgGaguaGuUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 66748 0.66 0.999283
Target:  5'- cGGCggcgCGuACGACCgc-UgGACCAGCGa -3'
miRNA:   3'- -CCGaa--GC-UGCUGGaguAgUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 79430 0.66 0.999123
Target:  5'- gGGCccggCGGCGGCggCggCGACCGGCGc -3'
miRNA:   3'- -CCGaa--GCUGCUGgaGuaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 81463 0.66 0.999123
Target:  5'- aGCUcuuauaUCGACGuCCgc-UCGGCCAGCGu -3'
miRNA:   3'- cCGA------AGCUGCuGGaguAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 149920 0.66 0.999123
Target:  5'- gGGCU---ACGACCg---CGACCGGCAg -3'
miRNA:   3'- -CCGAagcUGCUGGaguaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 186304 0.66 0.999123
Target:  5'- cGGCcggUCGccGCGGCgcgCUCGUCcuCCAACAc -3'
miRNA:   3'- -CCGa--AGC--UGCUG---GAGUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 46318 0.66 0.999123
Target:  5'- cGGCggCGACGGCgC-CGUCGccGCgGACGg -3'
miRNA:   3'- -CCGaaGCUGCUG-GaGUAGU--UGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 73991 0.66 0.999123
Target:  5'- cGCUaCGACGACCUgGUCc-CCAcgcuGCGc -3'
miRNA:   3'- cCGAaGCUGCUGGAgUAGuuGGU----UGU- -5'
10731 3' -49.9 NC_002794.1 + 66248 0.66 0.999123
Target:  5'- cGCUUgCGGCGACC-CGUcCGGCCccguaGACGa -3'
miRNA:   3'- cCGAA-GCUGCUGGaGUA-GUUGG-----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 95839 0.66 0.999123
Target:  5'- cGGCggCGGCGGCCggggaggCGGCgGGCGg -3'
miRNA:   3'- -CCGaaGCUGCUGGagua---GUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 177623 0.66 0.999123
Target:  5'- cGCUccUCGACGACgaggcCGACCAGCGu -3'
miRNA:   3'- cCGA--AGCUGCUGgaguaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 53279 0.66 0.999105
Target:  5'- gGGCggCGAgCGACCacUCcaggugccgagcgGUCGGCCGGCGc -3'
miRNA:   3'- -CCGaaGCU-GCUGG--AG-------------UAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 30580 0.66 0.998952
Target:  5'- aGCgu-GACGACCUCGUCcuucgugaacccuuCCAACGu -3'
miRNA:   3'- cCGaagCUGCUGGAGUAGuu------------GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 86033 0.66 0.998932
Target:  5'- cGGCg--GACaGGCCUCAUCgGGCCGGg- -3'
miRNA:   3'- -CCGaagCUG-CUGGAGUAG-UUGGUUgu -5'
10731 3' -49.9 NC_002794.1 + 31414 0.66 0.998932
Target:  5'- cGCgccCGcCGcCUUCGUCGACCAGCu -3'
miRNA:   3'- cCGaa-GCuGCuGGAGUAGUUGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.