miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 35773 0.66 0.999283
Target:  5'- cGGCaccgUCGcCGGCgUCGUCu-CCGGCGu -3'
miRNA:   3'- -CCGa---AGCuGCUGgAGUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 83697 0.66 0.999283
Target:  5'- uGCgaCGACGGCCUCugcCAGauCCGACu -3'
miRNA:   3'- cCGaaGCUGCUGGAGua-GUU--GGUUGu -5'
10731 3' -49.9 NC_002794.1 + 177623 0.66 0.999123
Target:  5'- cGCUccUCGACGACgaggcCGACCAGCGu -3'
miRNA:   3'- cCGA--AGCUGCUGgaguaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 95839 0.66 0.999123
Target:  5'- cGGCggCGGCGGCCggggaggCGGCgGGCGg -3'
miRNA:   3'- -CCGaaGCUGCUGGagua---GUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 66248 0.66 0.999123
Target:  5'- cGCUUgCGGCGACC-CGUcCGGCCccguaGACGa -3'
miRNA:   3'- cCGAA-GCUGCUGGaGUA-GUUGG-----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 73991 0.66 0.999123
Target:  5'- cGCUaCGACGACCUgGUCc-CCAcgcuGCGc -3'
miRNA:   3'- cCGAaGCUGCUGGAgUAGuuGGU----UGU- -5'
10731 3' -49.9 NC_002794.1 + 46318 0.66 0.999123
Target:  5'- cGGCggCGACGGCgC-CGUCGccGCgGACGg -3'
miRNA:   3'- -CCGaaGCUGCUG-GaGUAGU--UGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 186304 0.66 0.999123
Target:  5'- cGGCcggUCGccGCGGCgcgCUCGUCcuCCAACAc -3'
miRNA:   3'- -CCGa--AGC--UGCUG---GAGUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 77404 0.67 0.997359
Target:  5'- uGGCcgUCGGCGAgauCCUgCAccaGACCGACAc -3'
miRNA:   3'- -CCGa-AGCUGCU---GGA-GUag-UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 80082 0.67 0.997359
Target:  5'- aGCUcgCGACGACCcUCAUCu-CCAu-- -3'
miRNA:   3'- cCGAa-GCUGCUGG-AGUAGuuGGUugu -5'
10731 3' -49.9 NC_002794.1 + 182965 0.67 0.997359
Target:  5'- cGGCggcCGGCu-CCUCGUUcgAGCCGACGg -3'
miRNA:   3'- -CCGaa-GCUGcuGGAGUAG--UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 140321 0.67 0.996882
Target:  5'- cGGCUggagaaguccUUGGCGucucuGCCUUAUCGGCCcGACGu -3'
miRNA:   3'- -CCGA----------AGCUGC-----UGGAGUAGUUGG-UUGU- -5'
10731 3' -49.9 NC_002794.1 + 44170 0.67 0.996882
Target:  5'- cGGCgcgagCGGCGG-CUCGUCGACUccgGGCGa -3'
miRNA:   3'- -CCGaa---GCUGCUgGAGUAGUUGG---UUGU- -5'
10731 3' -49.9 NC_002794.1 + 57418 0.67 0.997774
Target:  5'- uGGC--CGGCGugCUgGUCGGCaCGGCGc -3'
miRNA:   3'- -CCGaaGCUGCugGAgUAGUUG-GUUGU- -5'
10731 3' -49.9 NC_002794.1 + 133491 0.67 0.997774
Target:  5'- uGGCUuucgCGGCGACC-CGUCcgaCGGCGa -3'
miRNA:   3'- -CCGAa---GCUGCUGGaGUAGuugGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 75383 0.67 0.997532
Target:  5'- cGGCggCGGCGGCCUCuccccgucccuccucGUCcGCCGu-- -3'
miRNA:   3'- -CCGaaGCUGCUGGAG---------------UAGuUGGUugu -5'
10731 3' -49.9 NC_002794.1 + 186345 0.67 0.997774
Target:  5'- cGGCggCGGCGACgUgccCGACCAGCc -3'
miRNA:   3'- -CCGaaGCUGCUGgAguaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 42616 0.67 0.998133
Target:  5'- gGGCUcucUCGACGACCgcgCucucacagcggaGUCGcggccgaaGCCGACGg -3'
miRNA:   3'- -CCGA---AGCUGCUGGa--G------------UAGU--------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 191001 0.67 0.998133
Target:  5'- cGGCgucgCGAuCGGCCgu-UCGAUCGGCAc -3'
miRNA:   3'- -CCGaa--GCU-GCUGGaguAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 89883 0.67 0.996276
Target:  5'- uGGCgaaccgUCGACGACgucgccuUUCAUCGGCCcguuGGCGc -3'
miRNA:   3'- -CCGa-----AGCUGCUG-------GAGUAGUUGG----UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.