Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 75383 | 0.67 | 0.997532 |
Target: 5'- cGGCggCGGCGGCCUCuccccgucccuccucGUCcGCCGu-- -3' miRNA: 3'- -CCGaaGCUGCUGGAG---------------UAGuUGGUugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 133491 | 0.67 | 0.997774 |
Target: 5'- uGGCUuucgCGGCGACC-CGUCcgaCGGCGa -3' miRNA: 3'- -CCGAa---GCUGCUGGaGUAGuugGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 13821 | 0.68 | 0.994208 |
Target: 5'- cGGCggCGACGGCCUCcUCcuCCu--- -3' miRNA: 3'- -CCGaaGCUGCUGGAGuAGuuGGuugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 104806 | 0.68 | 0.994208 |
Target: 5'- uGCUucgCGAUGGCCagGUCggUCAGCGg -3' miRNA: 3'- cCGAa--GCUGCUGGagUAGuuGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 188311 | 0.68 | 0.99331 |
Target: 5'- cGGCccgucgUCGuCGuCCUCGUCGccgccGCCGGCGg -3' miRNA: 3'- -CCGa-----AGCuGCuGGAGUAGU-----UGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 67394 | 0.68 | 0.99331 |
Target: 5'- cGGCgccagcgUCGGCG-CCagCGUCGgcGCCAGCGu -3' miRNA: 3'- -CCGa------AGCUGCuGGa-GUAGU--UGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 96237 | 0.68 | 0.99331 |
Target: 5'- cGCUUCGucaACGGCCcgGUCuuCCAGCAc -3' miRNA: 3'- cCGAAGC---UGCUGGagUAGuuGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 5676 | 0.68 | 0.992304 |
Target: 5'- cGGC--CGAUGACCUgAUCAACaugGACGc -3' miRNA: 3'- -CCGaaGCUGCUGGAgUAGUUGg--UUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 191682 | 0.68 | 0.992304 |
Target: 5'- cGGCggCGGCGugcCCUCGUCGcggACCAc-- -3' miRNA: 3'- -CCGaaGCUGCu--GGAGUAGU---UGGUugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 180842 | 0.68 | 0.994208 |
Target: 5'- cGGCgucaccgUCGucuACGGCCUCGUCGGaggCGGCGg -3' miRNA: 3'- -CCGa------AGC---UGCUGGAGUAGUUg--GUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 120054 | 0.68 | 0.994208 |
Target: 5'- cGGCggUGGCGGCCgcggaGGCCGACGc -3' miRNA: 3'- -CCGaaGCUGCUGGaguagUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 17249 | 0.68 | 0.995971 |
Target: 5'- -cCUUCGACGGCggcgacccggCUCGUCAcccgggcacgccgccGCCGACGg -3' miRNA: 3'- ccGAAGCUGCUG----------GAGUAGU---------------UGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 159951 | 0.68 | 0.995712 |
Target: 5'- cGGUuUUCGACGAag--GUCGACCGACGu -3' miRNA: 3'- -CCG-AAGCUGCUggagUAGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 64409 | 0.68 | 0.995712 |
Target: 5'- gGGCcaccgUCGucauccccaACGGCUUCAgcgcCAACCAGCAa -3' miRNA: 3'- -CCGa----AGC---------UGCUGGAGUa---GUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 99739 | 0.68 | 0.995712 |
Target: 5'- uGCUgUCGAagGACCUgGUCuGGCCGACGu -3' miRNA: 3'- cCGA-AGCUg-CUGGAgUAG-UUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 55298 | 0.68 | 0.995712 |
Target: 5'- gGGCggCGGCGGCgUCG-CGGCgGGCGc -3' miRNA: 3'- -CCGaaGCUGCUGgAGUaGUUGgUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 188045 | 0.68 | 0.995006 |
Target: 5'- cGGacgCGGCGAgUCUCGacuUCGGCCAGCGu -3' miRNA: 3'- -CCgaaGCUGCU-GGAGU---AGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 12927 | 0.68 | 0.994776 |
Target: 5'- uGGCcgUCGACGACCUggcggacuucguggCGUUGGCCGu-- -3' miRNA: 3'- -CCGa-AGCUGCUGGA--------------GUAGUUGGUugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 14929 | 0.68 | 0.992304 |
Target: 5'- cGGUccCGACGugCUC-UCGAUCGGCu -3' miRNA: 3'- -CCGaaGCUGCugGAGuAGUUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 82051 | 0.69 | 0.991181 |
Target: 5'- cGGCggCGGCGGCgUCGUCcucggccucGCCGGCc -3' miRNA: 3'- -CCGaaGCUGCUGgAGUAGu--------UGGUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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