Results 101 - 120 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 92343 | 0.71 | 0.971618 |
Target: 5'- cGGCU-CGGCGuCaaCGUCGACCGGCu -3' miRNA: 3'- -CCGAaGCUGCuGgaGUAGUUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 32821 | 0.72 | 0.936654 |
Target: 5'- cGuCUUCGuCGGCCUCG-CGGCCGGCu -3' miRNA: 3'- cC-GAAGCuGCUGGAGUaGUUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 29212 | 0.72 | 0.946081 |
Target: 5'- cGGCggUCGGCGGCC--GUCGGCCGccgaGCAg -3' miRNA: 3'- -CCGa-AGCUGCUGGagUAGUUGGU----UGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 137457 | 0.72 | 0.948718 |
Target: 5'- cGGCggaauccgccgugUCGGCGGCCUCGUaGAgCAGCGc -3' miRNA: 3'- -CCGa------------AGCUGCUGGAGUAgUUgGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 75316 | 0.72 | 0.950004 |
Target: 5'- uGGCgacaccuagCGACGACCUCuUCccccgaaGACCGGCGa -3' miRNA: 3'- -CCGaa-------GCUGCUGGAGuAG-------UUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 90973 | 0.72 | 0.954535 |
Target: 5'- cGCUUCGGCGugGCCUCGUaccgGGCCGAg- -3' miRNA: 3'- cCGAAGCUGC--UGGAGUAg---UUGGUUgu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 128000 | 0.72 | 0.950428 |
Target: 5'- gGGCg--GACGACCgUCGUCGGCCGc-- -3' miRNA: 3'- -CCGaagCUGCUGG-AGUAGUUGGUugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 58506 | 0.72 | 0.950428 |
Target: 5'- uGC-UCGACGugCUCGUCcACgGGCAc -3' miRNA: 3'- cCGaAGCUGCugGAGUAGuUGgUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 119632 | 0.72 | 0.954535 |
Target: 5'- cGGCcgUCGucagcACGGCUUCGUCggUCAGCGu -3' miRNA: 3'- -CCGa-AGC-----UGCUGGAGUAGuuGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 8119 | 0.73 | 0.920657 |
Target: 5'- aGCgggCGGCGGCCUCcUCGgugACCGGCGa -3' miRNA: 3'- cCGaa-GCUGCUGGAGuAGU---UGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 114721 | 0.73 | 0.914827 |
Target: 5'- cGGCggCGGCGGCUccggguUCGUCgAGCCGGCGc -3' miRNA: 3'- -CCGaaGCUGCUGG------AGUAG-UUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 18809 | 0.74 | 0.889061 |
Target: 5'- cGGCcaacgggUCGGCGACCUCG---GCCGGCGc -3' miRNA: 3'- -CCGa------AGCUGCUGGAGUaguUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 37910 | 0.74 | 0.874751 |
Target: 5'- cGGC-UCGcCGGCCUCAacgUCAACCGccGCGg -3' miRNA: 3'- -CCGaAGCuGCUGGAGU---AGUUGGU--UGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 75288 | 0.74 | 0.902429 |
Target: 5'- cGGCcggcCGGCG-CCUCGcCAGCCGACAu -3' miRNA: 3'- -CCGaa--GCUGCuGGAGUaGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 57619 | 0.74 | 0.895864 |
Target: 5'- aGGCggcCGACGACCUgGcCGACCcGCAg -3' miRNA: 3'- -CCGaa-GCUGCUGGAgUaGUUGGuUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 129189 | 0.75 | 0.867255 |
Target: 5'- cGGCcuccgggUCGACGACCgag-CGGCCGACGg -3' miRNA: 3'- -CCGa------AGCUGCUGGaguaGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 98993 | 0.75 | 0.85161 |
Target: 5'- cGGUggUCGGCGGCUUCGUCAGCUucuuCAc -3' miRNA: 3'- -CCGa-AGCUGCUGGAGUAGUUGGuu--GU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 98907 | 0.75 | 0.843474 |
Target: 5'- cGGUcUCGACGACUUCAUgAGCgGGCu -3' miRNA: 3'- -CCGaAGCUGCUGGAGUAgUUGgUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 76839 | 0.75 | 0.843474 |
Target: 5'- cGGCgaugcgCGcCGGCCUCGUCGGCCcAGCu -3' miRNA: 3'- -CCGaa----GCuGCUGGAGUAGUUGG-UUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 65902 | 0.75 | 0.843474 |
Target: 5'- cGCgUCGACGACCUugacCGUCGucGCCGGCGg -3' miRNA: 3'- cCGaAGCUGCUGGA----GUAGU--UGGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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