miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 150913 1.11 0.011154
Target:  5'- gGGCUUCGACGACCUCAUCAACCAACAc -3'
miRNA:   3'- -CCGAAGCUGCUGGAGUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 56848 0.85 0.353516
Target:  5'- cGCUUCGACGACCUCAaCAagaugagcACCGGCAa -3'
miRNA:   3'- cCGAAGCUGCUGGAGUaGU--------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 175435 0.76 0.809009
Target:  5'- cGGCgcaGACGAUCgUCGUCGAUCAACGu -3'
miRNA:   3'- -CCGaagCUGCUGG-AGUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 56363 0.76 0.790741
Target:  5'- aGGCggUCGACGugCUCGggaUCcACCGGCAc -3'
miRNA:   3'- -CCGa-AGCUGCugGAGU---AGuUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 65902 0.75 0.843474
Target:  5'- cGCgUCGACGACCUugacCGUCGucGCCGGCGg -3'
miRNA:   3'- cCGaAGCUGCUGGA----GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 98993 0.75 0.85161
Target:  5'- cGGUggUCGGCGGCUUCGUCAGCUucuuCAc -3'
miRNA:   3'- -CCGa-AGCUGCUGGAGUAGUUGGuu--GU- -5'
10731 3' -49.9 NC_002794.1 + 98907 0.75 0.843474
Target:  5'- cGGUcUCGACGACUUCAUgAGCgGGCu -3'
miRNA:   3'- -CCGaAGCUGCUGGAGUAgUUGgUUGu -5'
10731 3' -49.9 NC_002794.1 + 129189 0.75 0.867255
Target:  5'- cGGCcuccgggUCGACGACCgag-CGGCCGACGg -3'
miRNA:   3'- -CCGa------AGCUGCUGGaguaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 76839 0.75 0.843474
Target:  5'- cGGCgaugcgCGcCGGCCUCGUCGGCCcAGCu -3'
miRNA:   3'- -CCGaa----GCuGCUGGAGUAGUUGG-UUGu -5'
10731 3' -49.9 NC_002794.1 + 68919 0.75 0.854807
Target:  5'- gGGCUcgCGGCGuCCUCGUCGcccgcgggccgcggcGCCGGCGc -3'
miRNA:   3'- -CCGAa-GCUGCuGGAGUAGU---------------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 18809 0.74 0.889061
Target:  5'- cGGCcaacgggUCGGCGACCUCG---GCCGGCGc -3'
miRNA:   3'- -CCGa------AGCUGCUGGAGUaguUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 75288 0.74 0.902429
Target:  5'- cGGCcggcCGGCG-CCUCGcCAGCCGACAu -3'
miRNA:   3'- -CCGaa--GCUGCuGGAGUaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 37910 0.74 0.874751
Target:  5'- cGGC-UCGcCGGCCUCAacgUCAACCGccGCGg -3'
miRNA:   3'- -CCGaAGCuGCUGGAGU---AGUUGGU--UGU- -5'
10731 3' -49.9 NC_002794.1 + 57619 0.74 0.895864
Target:  5'- aGGCggcCGACGACCUgGcCGACCcGCAg -3'
miRNA:   3'- -CCGaa-GCUGCUGGAgUaGUUGGuUGU- -5'
10731 3' -49.9 NC_002794.1 + 8119 0.73 0.920657
Target:  5'- aGCgggCGGCGGCCUCcUCGgugACCGGCGa -3'
miRNA:   3'- cCGaa-GCUGCUGGAGuAGU---UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 114721 0.73 0.914827
Target:  5'- cGGCggCGGCGGCUccggguUCGUCgAGCCGGCGc -3'
miRNA:   3'- -CCGaaGCUGCUGG------AGUAG-UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 75316 0.72 0.950004
Target:  5'- uGGCgacaccuagCGACGACCUCuUCccccgaaGACCGGCGa -3'
miRNA:   3'- -CCGaa-------GCUGCUGGAGuAG-------UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 58506 0.72 0.950428
Target:  5'- uGC-UCGACGugCUCGUCcACgGGCAc -3'
miRNA:   3'- cCGaAGCUGCugGAGUAGuUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 32821 0.72 0.936654
Target:  5'- cGuCUUCGuCGGCCUCG-CGGCCGGCu -3'
miRNA:   3'- cC-GAAGCuGCUGGAGUaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 90973 0.72 0.954535
Target:  5'- cGCUUCGGCGugGCCUCGUaccgGGCCGAg- -3'
miRNA:   3'- cCGAAGCUGC--UGGAGUAg---UUGGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.